Query= MSMg01no108_m09.b1 MSMg01no108_m09.b1 CHROMAT_FILE:
MSMg01no108_m09.b1 PHD_FILE: MSMg01no108_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:44 2005
(589 letters)
>mm_chr5_141843786_141844775
Length = 990
Score = 1044 bits (540), Expect = 0.0
Identities = 573/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 7 gaattcatgccggacgcccacttgtataacccctgtgaagtg-acatgtacctgtgtatg 65
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 207 gaattcataccggatgcccacttgtataacccctgtgaagtgtacatgtacctgtgtatg 266
Query: 66 ggtatgtctggcctttgtttctgacttgagactacagtagtacatttccaggttgcaatc 125
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgcatgcctggcctttgtttctgacttgagactacagtagtacatttccaggttgcaatc 326
Query: 126 aagggatatgaatggtgtctcactcatttatacatagaatttctaacttcagaaagataa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagggatatgaatggtgtctcactcatttatacatagaatttctaacttcagaaagataa 386
Query: 186 ttttccagtgtacatctttattgttgtattattacagatttttgtgtaaattacattttt 245
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 ttttccagtgtacatctttattgttgtattattacagatttgtgtgtaaattacattttt 446
Query: 246 tctatgtgggttatcattttcttgtccaaatttctaaatggtttagagggaaaaaaaata 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctatgtgggttatcattttcttgtccaaatttctaaatggtttagagggaaaaaaaata 506
Query: 306 cacagttgggattcaagaactgaaggagcttctggggagcatgggctctgatgtgggcct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cacagttgggattcaagaactgaaggagcttctggggagcatgggctctgatgtgggcct 566
Query: 366 tccccagcagcctttgtggctttgggaggcctcaggtttctctttaaagaagatttatcc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tccccagcagcctttgtggctttgggaggcctcaggtttctctttaaagaagatttatcc 626
Query: 426 aaccctgggctccatgataaacaaggaattaattggctcccaggtaagccagaattgaaa 485
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaccctgggctccttgataaacaaggaattaattggctcccaggtaagccagaattgaaa 686
Query: 486 gcatcattattaatggagtctgttgactttgtttattacacgatgtagtcttgtagtgtg 545
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 687 gcatcattattaatggagtctgttgactttgtttattacatgatgtagtcttgtagtgtg 746
Query: 546 ctcacgggcttcggttctgtttgtttgttgtttgtttgttttgt 589
||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 747 ctcacgggctttggttctgtttgtttgttgtttttttgttttgt 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space: 567420
Effective search space used: 567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_m09.g1 MSMg01no108_m09.g1 CHROMAT_FILE:
MSMg01no108_m09.g1 PHD_FILE: MSMg01no108_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:44 2005
(533 letters)
>mm_chr5_141978501_141979433
Length = 933
Score = 969 bits (501), Expect = 0.0
Identities = 525/533 (98%)
Strand = Plus / Minus
Query: 1 tttctcagggtaaaggatgcccaggagcccacaacatggtggttgtaagtggctacagag 60
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 733 tttctcagggtaaaggatgcccaggagcccacaacatggcggctgtaagtgactacagag 674
Query: 61 gtaaacagtggaataggctctgtcacagctgaccccgagaagctccagagctggcaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtaaacagtggaataggctctgtcacagctgaccccgagaagctccagagctggcaggga 614
Query: 121 ggaaaacaaacagccaagttgacttaagatgtccatgccatctgtccaaatcaaagggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggaaaacaaacagccaagttgacttaagatgtccatgccatctgtccaaatcaaagggta 554
Query: 181 ggactagaaaggaggttcagtcacagctgtgatgaagatggtcccccagaccagccagag 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggattagaaaggaggttcagtcacagctgtgatgaagatggtcccccagaccagccagag 494
Query: 241 actgccctaccccctctccacaggctgcacagaccacctccacagagggaggctccagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 actgccctaccccctctccacaggctgcacagaccacctccacagagggaggctccagat 434
Query: 301 cagccatccccaggatgttcaccccaaccagacacatggctgttggcaacaacacttgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cagccatccccaggatgttcaccccaaccagacacatggctgttggcaacaacacttgaa 374
Query: 361 gcagaacatgagacaagtctatggcaaatcaagcattgccaaggtccttgtgcctctagg 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcagaacatcagacaagtctatggcaaatcaagcattgccaaggtccttgtgcctctagg 314
Query: 421 gctcagagtcagcagcaggggagactccacactgtggttgcttcatcagtagcagagcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gctcagagtcagcagcaggggagactccacactgtggttgcttcatcagtagcagagcaa 254
Query: 481 gaacacttgcaattttattcagggaggaggcaacaaatttgccccacctcaca 533
||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 253 gaacacttgaaattttatttagggaggaggcaacaaatttgtcccacctcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
