BAC Information

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BAC

Clone NameMSMg01-108N01
Chromosome5 (Build37)
Map Location 70,894,141 - 70,894,384
singlet/doubletsinglet
Overlap genenone
Upstream geneYipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N01.T7 (MSMg01no108_n01.b1)MSMg01-108N01.TJ (MSMg01no108_n01.g1)
ACCAG322164AG322165
length722709
length of high quality
(start - end)
275 (59 - 333)283 (84 - 366)
definitionCHROMAT_FILE: MSMg01no108_n01.b1 PHD_FILE: MSMg01no108_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:48 2005CHROMAT_FILE: MSMg01no108_n01.g1 PHD_FILE: MSMg01no108_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATTTCTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCATTTACTTACTGAACCATCTCTCCAAACCTTT
TGAAGTACTTCTAAATGACCTGAATCTTCAGAGGACATTTTAAAGGATAA
TTTGTCAAAATCAGCTATTCTATATTACTAGAATTTGTTGGGTTTTTTTT
GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTCA
GCTGAAGATGTGGCTTAACTCGCTGATCTTTTCAGGATTTGCCAGTCCCC
AAGATGTACATATATTGCTTAAAAATTCTGTAACTCAAGCACCAGGAGAT
TAGACCCTGTGATAAGTATAGAGGTGTGACTAACCTTTTCAAACCTATTT
CAAATGTAAGGGAGAAAAGCAAGAAATGTGTTACATATTCCTATGTACAA
TTTTATAAGTTTAATGAATTGCAACTTGATTAATACTCTGTCCGCATTAG
CTTCTCATCTTTGCACAGCTGTTCTTTCTCTCTCTCTCTCTCTCCCTCTC
TCACTCTCTTATTCTCTCTCTCCCTCTGTCATCTCTCCCACACCCTCTCC
CCTACTCTCTCAGTTTCTCCTTTCCCCTTCTTTTCTTTCTTTTAGCCCCC
CTCAATCTTCCATTTTTTTTTTCCCTGCATACTACTCTTTATACCTATCG
TATCTCGAATCTATTTTTTATC
ACCCGAAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTC
TCAACAGTCTGTTTTACGGGAACCTTTATTACCGTGACCCGCAGTTCTGG
TTCTGGAATGAGGGATCTTCCTTGCGCCGGTCCCGAGTTTTCTTGTATTT
TTTCGTCCCGGATTTTTTCTCGTCCCGGATTTCAGCACCAACTCTTATAC
GCGTTCTCATGACCGGCCAGGAAAGACGCAACAAACCAAAATCTTCTGCG
GCAAAACTTTATTGCTTACATCTTCAGGAGCCAGGAGCGCAAACCCCCAG
CCCCAAAAGCGAAAGTCACCCCAATAATGAAACCGAAACCCCTTCCCTAT
TTAGGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCA
GCCCATGACCGAGCTGAAGTCACGGGAAAGGCAGAGTACAAGTAGCGGTA
AAATACCCTTGGCACATGCGCCGATTATTTGTTTACCATTTAGAATACCG
GATGCCCTCGCCTTCTTGCGACGCCGACTGTGCTCCCTGTTCTCTTTCCT
CCTAGACCTATTACGGGCACTACACTCATTAAAGTCAATCCCTCCCCGCG
GCATTGCTGGCTATTGAATTTCCTAGACCCTTCTCTCGCCCCCTTAATTG
CTCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n01.b1 MSMg01no108_n01.b1 CHROMAT_FILE:
MSMg01no108_n01.b1 PHD_FILE: MSMg01no108_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:48 2005
         (275 letters)



>mm_chr5_70894060_70894734
          Length = 675

 Score =  397 bits (205), Expect = e-115
 Identities = 243/271 (89%), Gaps = 27/271 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttacttactgaaccatctctccaaaccttttgaagtacttctaaatgacctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattcatttacttactgaaccatctctccaaaccttttgaagtacttctaaatgacctg 266

                                                                       
Query: 65  aatcttcagaggacattttaaaggataatttgtcaaaatcagctattctatattactaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcttcagaggacattttaaaggataatttgtcaaaatcagctattctatattactaga 206

                                                                       
Query: 125 atttgttgggttttttttgttttgttttgttttgttttgttttgttttgttttgttttgt 184
           |||| |||||        |||||    |||||||||||||||||||||            
Sbjct: 205 attt-ttggg--------gtttt----tgttttgttttgttttgtttt------------ 171

                                                                       
Query: 185 ttttttcagctgaagatgtggcttaactcgctgatcttttcaggatttgccagtccccaa 244
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 --ttttcagctgaagatgtggcttaactcgctgatcttttcaggatttgccagtccccaa 113

                                          
Query: 245 gatgtacatatattgcttaaaaattctgtaa 275
           |||||||||| ||||||||||||||||||||
Sbjct: 112 gatgtacatagattgcttaaaaattctgtaa 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)