BAC Information

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BAC

Clone NameMSMg01-108N24
Chromosome5 (Build37)
Map Location 113,463,676 - 113,583,672
singlet/doubletdoublet
Overlap geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2
Downstream geneGm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N24.T7 (MSMg01no108_n24.b1)MSMg01-108N24.TJ (MSMg01no108_n24.g1)
ACCAG322207AG322208
length684717
length of high quality
(start - end)
284 (77 - 360)388 (76 - 463)
definitionCHROMAT_FILE: MSMg01no108_n24.b1 PHD_FILE: MSMg01no108_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:52 2005CHROMAT_FILE: MSMg01no108_n24.g1 PHD_FILE: MSMg01no108_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,463,676 - 113,463,958)(113,583,285 - 113,583,672)
sequence
TATAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNGACGGATCC
GCGGAATTCTTGTATTTCACCAATCTTGTACCAGGTTCCATTCCTCCTCT
GGTAGGCAATCCAGGTTCCCCTGCCTAGGGAATGGTGCTACCCATAGTGG
GTGGGGTCTTCCTATATCGGTGAAGACACTCCCCGTGGACATGCCAACCG
GCTACCCAGTGTAGACTTCTCCCATATGATTTTAAGTAGAATCAAGTTGC
TACAGAACATCCTTAAGCCAAATCTAAAGTCCAAAATGTTCTGAACTTGG
AAGCTGCCCATCACCAATTCTTTTGTATCTCAGGGCTAATAATTTGGAGT
CCTTTGAGCTTTTATTCAGGAGTGGTATAGCTGGGTCTCGGAGTAGTTCT
GTTCTCAGCCTTTTGAGAAACCTTTGTACTGGTTTGCATGGTGTCTGCAG
TCAGTCATTCACATTTGTCAGCAGAATCTATGGGTTTCCTTCTCTCTGTT
TCCTCTCCAACATTTGCTCTCTTTTGTTTTTCTGATGACAGCCAGTCTGG
CTGGGGCTAGAAGGAATCTCAATGTGTTCTTAATTTGCATTTCCCTGATG
GCTAGTGGTGTTGAACATTTTCATGCAATTGCTGGCAGTTCCGAGTGGAT
CTTAGACCTCAGCGTCAGACCTAGAACTCTAAAA
TTCCCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTCCGAATTCCATCCCTGTAACTCACCTGCTG
GGAGGAGAGACCAGTCCCGCCAGTTGGCCTCTCTCTTCCACGTGCTCACT
AATAGATACATGTAGCAAGGGAATTTTAAACAGAAACAAAAGAAACGCTC
TGCAGGTGGGAGAACCTCATGTTTTCTGTGGAGATCCTGGCTGGGGCGCA
GCTGCCCTGTGTGCTGGAGGTTGCCTTTCTGCAGCCAATGGCTTTGTGAG
CACCATGTAACTGCCACTGTTGCCTGACATGCTAATATGCTCTAACAGAG
ATGTCCCCTCCTGACCTTATGTGCTCTGATGGACATGTCGCCTCCTAGAA
GCAGTCTTCATTCTCTTCTTCCTGGAAGAGATGCTGGAAAGAAGCCCCAT
CAGAATCCCAGGCCTGGAGAAGCCCCGCCCTGTAGTTCTGCCCTCCCCCT
CCCCCAAGTGAACATGAAGGTCTTGGGTGGAGGGTTTTGTCCTTGGCTCC
CTCTGTGACATCTCAGAATCTCTTGTGCATGATCTTCCCTGATGCCTGAT
TCCTCCTTCCTTAGTTTACTTAGACACCCTCCCCAAAATTCCCTATATAC
ATCCTCACTCATCTCTACATCCTTCTTTCTCCTATTCCTCCCTAACCTCT
TTGTACCCCCGTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n24.b1 MSMg01no108_n24.b1 CHROMAT_FILE:
MSMg01no108_n24.b1 PHD_FILE: MSMg01no108_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:52 2005
         (284 letters)



>mm_chr5_113463476_113464159
          Length = 684

 Score =  485 bits (251), Expect = e-142
 Identities = 275/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaccaggttccattcctcctctggtaggcaatccaggttcccctgcctagggaatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tgtaccaggttccattcctcctctggtaggcaatccaggttcccctgcctaaggaatggt 260

                                                                       
Query: 61  gctacccatagtgggtggggtcttcctatatcggtgaagacactccccgtggacatgcca 120
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gctgcccatagtgggtggggtcttcctacatcggtgaagacactccccgtggacatgcca 320

                                                                       
Query: 121 accggctacccagtgtagacttctcccatatgattttaagtagaatcaagttgctacaga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggctacccagtgtagacttctcccatatgattttaagtagaatcaagttgctacaga 380

                                                                       
Query: 181 acatccttaagccaaatctaaagtccaaaatgttctgaacttggaagctgcccatcacca 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 acatccttaagccaaatctaaagtccaaaatgtcctgaacttggaagctgcccatcacca 440

                                                      
Query: 241 attcttttgtatctcagggctaataatttggagtcctttgagc 283
           |||| |  |||||||||||||||||||||||||||||||||||
Sbjct: 441 attcataggtatctcagggctaataatttggagtcctttgagc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no108_n24.g1 MSMg01no108_n24.g1 CHROMAT_FILE:
MSMg01no108_n24.g1 PHD_FILE: MSMg01no108_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:52 2005
         (388 letters)



>mm_chr5_113583085_113583872
          Length = 788

 Score =  735 bits (380), Expect = 0.0
 Identities = 386/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccatccctgtaactcacctgctgggaggagagaccagtcccgccagttggcctctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttccatccctgtaactcacctgctgggaggagagaccagtcccgccagttggcctctctc 529

                                                                       
Query: 61  ttccacgtgctcactaatagatacatgtagcaagggaattttaaacagaaacaaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttccacgtgctcactaatagatacatgtagcaagggaattttaaacagaaacaaaagaaa 469

                                                                       
Query: 121 cgctctgcaggtgggagaacctcatgttttctgtggagatcctggctggggcgcagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cgctctgcaggtgggagaacctcatgttttctgtggagatcctggctggggcgcagctgc 409

                                                                       
Query: 181 cctgtgtgctggaggttgcctttctgcagccaatggctttgtgagcaccatgtaactgcc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 408 cctgtgtgctggaggttgcctttctgcagccaatggctctgtgagcaccatgtaactgcc 349

                                                                       
Query: 241 actgttgcctgacatgctaatatgctctaacagagatgtcccctcctgaccttatgtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actgttgcctgacatgctaatatgctctaacagagatgtcccctcctgaccttatgtgct 289

                                                                       
Query: 301 ctgatggacatgtcgcctcctagaagcagtcttcattctcttcttcctggaagagatgct 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctgatggagatgtcgcctcctagaagcagtcttcattctcttcttcctggaagagatgct 229

                                       
Query: 361 ggaaagaagccccatcagaatcccaggc 388
           ||||||||||||||||||||||||||||
Sbjct: 228 ggaaagaagccccatcagaatcccaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)