Query= MSMg01no109_b08.b1 MSMg01no109_b08.b1 CHROMAT_FILE:
MSMg01no109_b08.b1 PHD_FILE: MSMg01no109_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:09 2005
(142 letters)
>mm_chr5_144581523_144582064
Length = 542
Score = 252 bits (130), Expect = 1e-71
Identities = 139/142 (97%)
Strand = Plus / Plus
Query: 1 tcgattggattcacttcctgttcctccccggctctccagaggtccacccccactcctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgattggattcacttcctgttcctccccggctctccagaggtccacccccactcctcac 260
Query: 61 cacattttaccttcccgtctttctcctcctttttattttttactttttaagacttatttt 120
||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 261 cacattttaacttcccgtctttctcctcctttttattttttattttttaagatttatttt 320
Query: 121 tatgtatatgaagatgctgttg 142
||||||||||||||||||||||
Sbjct: 321 tatgtatatgaagatgctgttg 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space: 71556
Effective search space used: 71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no109_b08.g1 MSMg01no109_b08.g1 CHROMAT_FILE:
MSMg01no109_b08.g1 PHD_FILE: MSMg01no109_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:09 2005
(601 letters)
>mm_chr5_144795230_144796230
Length = 1001
Score = 862 bits (446), Expect = 0.0
Identities = 467/474 (98%), Gaps = 1/474 (0%)
Strand = Plus / Minus
Query: 1 ttaacaagaagcacgcaaatgccatcccccgacagcaaacggggcgttatcacccacggg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 474 ttaacaagaagcatgcaaatgccatcccccgacagcaaacggggcgttatcacccacagg 415
Query: 61 atctttcacaggatgggaggaacgcaagctgtgggaatctcagtccttaaggaagacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atctttcacaggatgggaggaacgcaagctgtgggaatctcagtccttaaggaagacgcc 355
Query: 121 agaagggtacagctggatcatgtgatagttgtgtctttaacatttctgtcaacttgttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaagggtacagctggatcatgtgatagttgtgtctttaacatttctgtcaacttgttct 295
Query: 181 ctcaagaacttttcatttcaagaagtcaaatgtgttaaactggacctaggtagtgcaggc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctcaagaaattttcatttcaagaagtcaaatgtgttaaactggacctaggtagtgcaggc 235
Query: 241 ctgcagttctagtgctaggggagctgagacacttaggagctcaaggcaacttagtgagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ctgcagttctagtgctaggggagctgagacacttaggagctcaaggcaacttagtgagat 175
Query: 301 cctgcctcagagtcaaagtgaaaaggctggggcgtggctcagtggtagagcccctgccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cctgcctcagagtcaaagtgaaaaggctggggcgtggctcagtggtagagcccctgccta 115
Query: 361 gaatcccccagtgaggggctggggcgtgactcagtggtagagcccctgcctagaatcccc 420
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 114 gaatcccccagtgaggggctggggtgtggctcagtggtagagcccctgcctagaatcccc 55
Query: 421 cagtgaggggct-ggggcatggctcagtggtagagcccctgcctagaatccccc 473
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 cagtgaggggctgggggcgtggctcagtggtagagcccctgcctagaatccccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
