BAC Information

Click to search

BAC

Clone NameMSMg01-109B22
Chromosome5 (Build37)
Map Location 126,312,772 - 126,313,217
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B22.T7 (MSMg01no109_b22.b1)MSMg01-109B22.TJ (MSMg01no109_b22.g1)
ACCAG322383AG322384
length726728
length of high quality
(start - end)
292 (82 - 373)449 (86 - 534)
definitionCHROMAT_FILE: MSMg01no109_b22.b1 PHD_FILE: MSMg01no109_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:12 2005CHROMAT_FILE: MSMg01no109_b22.g1 PHD_FILE: MSMg01no109_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATTTCCAATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAC
GGCGCGGAATTCCTCAAAATTTTCGATGAAGTTCTCAAGGAATTAATTAA
TATAGTTCTTAATATACAATGTCTTTACTGAACATATACAGACCACTTAT
ATTTCAATCTCCTAAATAGCAACTCATTTTATAGCACTTACATTACATTA
AGTGCAAAAGTAATCCAGAGATTATTTAAAATAAAGAAGGATCAGGGGAT
ATGGCCCAGAGACAATGCCATGTGTGTGTTAAAACATTCACCTACAACAC
CAGTGCTTATGATTTTGGGAGGGGCAGAGATAGGAAGATGACTGTGGCTT
CCTGAAAGCCAGCTCAGCAAGAAATCCAGTCACAAGGGGATAAGTTATGG
AGGAAAAGAGCAGATCACACTATACCCTTCCCTAGTCTCTGAACTTACCT
GTACAGTTCTCTATGTAGACTCACATAAATATGATTAAAATATGCAAGAG
GTTACTTTGCTTAGCTTATATTCTAAAGCAATGCTGTTTTAGACTAGACT
CCTGAGGACTTTACATCCTTATAGTTCCTGTAGCCAACTCCCCCGATATA
CATGATGTCCATATCTTCCTACTGTGCACAGGAAACCTCAGCTAACCGTG
TGCGCCATTGATTCCCAACAGCCTTCCCCATCTACGATCCCCCCATTACC
CCTAGTCCGACCCGCTATCATTGACC
AGTGGTNTNNATCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGCAATTTAG
TAAATTTGATTAATGTCTCCTTACATCACATAGATATTTTCTACAGTGCA
TATAAGCACATATATTTTAGAATATACTGAAACTTAAAAATGTAAATTAA
AAAAAAAACAAAAACCTCTACCAACTTCAAATTAAAAAACACATTTATTT
TAGAATTCTCTAGGATACTCGTAATTTCCTGTATTCCCTACTCATGATGT
CCATATGTTAGCATCTTACAAATTTGTATGACAATAATGAGGAGAAAATA
AAATTTGTAAGGAAAAAAAAAAGACAGTTTTGTCTTAGACTACTTATTAA
CAAATGCCTGGGCCACAAACTGTGGCTTATTCCCAGAATAACGTATTTAA
CACATTCAAAATATTTTATGTTTTGTACATTTTTAGNTACCCCTTTATCT
ATTTACTTAGCATCTTCCTAAATATCTCCCTTAGCATATGTGCCAGCATC
TGGCCCTGAATCTGGTTATTCTCCTAAGATTTCATAGAAGACTCTCGTTT
TTGAAAAGNCGCAGCGCAGAGTTTCTTCCTCAGCTCATTTGTCATACACA
TTATTTAATTGACTGATGATGNTTAGAAGTAGAGCTCAGAGCTTGGTGTT
CTATTAACAACTAATTATCTCTTTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b22.g1 MSMg01no109_b22.g1 CHROMAT_FILE:
MSMg01no109_b22.g1 PHD_FILE: MSMg01no109_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:13 2005
         (449 letters)



>mm_chr5_126312539_126313386
          Length = 848

 Score =  201 bits (104), Expect = 7e-56
 Identities = 353/461 (76%), Gaps = 57/461 (12%)
 Strand = Plus / Plus

                                                                       
Query: 31  tctccttacatcacata-gatattttctacagt-gcat---ataagcacatatattttag 85
           ||||||||||||||| | || ||||||||| || | ||   |||| ||||||||||||||
Sbjct: 234 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 291

                                                                       
Query: 86  aatatactgaaactt-aaaaatgtaaattaaaaaaaaaacaaaaacctctaccaacttca 144
           ||||||| ||||||| ||||||| ||||  ||||      ||| ||||||||| ||||  
Sbjct: 292 aatatacagaaacttgaaaaatggaaatggaaaa------aaatacctctaccgactttg 345

                                                                       
Query: 145 aattaaaaaacacatttattttagaattctctaggatactcgtaatttcctgtattccct 204
           |||||||||||||||||||||||||||||||||||||| | | ||||||| | || ||||
Sbjct: 346 aattaaaaaacacatttattttagaattctctaggatagttgcaatttcccgcataccct 405

                                                                       
Query: 205 actcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggagaaaa 263
           || |||||| ||||||| ||||||||||||| |||  |||||| |||||| |||||||| 
Sbjct: 406 acacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaaat 464

                                                                       
Query: 264 taaaatttgtaaggaaaaaaaaaagacagtttt---------gt--ct--t--------- 301
           |||  |||||||    ||||||||  | |||||         ||  ||  |         
Sbjct: 465 taacctttgtaa----aaaaaaaatcc-gtttttccttccctgttcctgctccctgaatg 519

                                                                       
Query: 302 ---------agactacttattaacaaatgcctgggccacaaactgtggcttattcccaga 352
                    |||||| |||||||||||||||| |||||||| || |||||  ||||  ||
Sbjct: 520 acgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctgga 579

                                                                       
Query: 353 ataacgtatttaacacattcaaaatattttatgttttgtacatttttagntacc-c-ctt 410
            |||| |||||||| |||||||| |||| || || || |||||  |||| |||| | |||
Sbjct: 580 ctaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctctt 639

                                                    
Query: 411 t-atc-tatttacttagcatcttcctaaatatctcccttag 449
           | ||| | ||  |||||||||||||| || |||||||||||
Sbjct: 640 tcatcctcttc-cttagcatcttcctcaacatctcccttag 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space:   367882
Effective search space used:   367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)