BAC Information

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BAC

Clone NameMSMg01-109F13
Chromosome5 (Build37)
Map Location 55,216,636 - 55,216,837
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d19, Stim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109F13.T7 (MSMg01no109_f13.b1)MSMg01-109F13.TJ (MSMg01no109_f13.g1)
ACCAG322556AG322557
length750764
length of high quality
(start - end)
237 (72 - 308)201 (71 - 271)
definitionCHROMAT_FILE: MSMg01no109_f13.b1 PHD_FILE: MSMg01no109_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:32 2005CHROMAT_FILE: MSMg01no109_f13.g1 PHD_FILE: MSMg01no109_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTCGAAAGGAGCGCGGAAT
TCTAGGATATACCAAAACATCCACCTGGGGAGCATCAGCTTGTCTGTTCC
TCTGAAGACCCCACAGTCTGAAAGCACCACAGAAGGTCTGTTACAGACAA
GCCCACAGTTAGGAGCCTAGCATGACTGACCTCTGAGACACCCAACAAAC
ATCTGACTGAGACAAGCAGCTGACTGAGACTGAGGCAGATACCTAACCAA
TGGACAGAGGCCAGGGACCCCTGCAGCTGAATTAGAGAAAGGCTGGAAGA
ACTTCAGGAGGAGTGTTTTTTCATAGGAAGACCAACAGTTTCAACAAACC
TGGCTCCCTGAGATCTCTGACACTGAACCACCAATCTGGCAGCACATACT
ATCTGGTCTGAGGCCACCCAGAACATATACAGTAGAGGACTGCCTGGCCT
GACCTAATGAAAGAAGAGATATCCATAACTTGAGAGGCTTGACGTCCCAA
AGAGTTGGCATCTCTGCTGTGTTATGGGTCTTGTGAAATGATTGCTGTCA
ATTCCCCTTAAAAATGTACCGGATATGTTTTTCTTTTACTCACCCTCCTA
TCCCATCACTAACATACTATCCAATATTCTCTAATACGCAACAATCTCTA
ATTATATATCCTATTACTTTTACTCATATTTAATTCTCACACTATCTATT
CTCATCGTTGATTGTCCACCCTACATACATCTAACTTACACTCCTCTATA

TCAATATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGAAATTCTTTGTTCACAACGAGAGATAGAGATCC
ATTTCCCTTTTGTGAGATGTGAACATCTTGTTTTGCCAGCACCATTTGCA
TGCCTTTGGCATGTTTGTGCAAACTCAGATGATTGTGACTATATGCTTCA
TGGATCCATGTCTGTTTTATTCCATGACTGATGCTGTTTTGTTATCATGC
TTCTTTTTTTATCATTTGATATAAAGCATGGGCAAACCTATGTGATTTTT
TGCGTGTGCGCGTGCGTGTTTTTTCTTGAGAGTGTGTAACATCACCACCC
ACCTCTTTTTTTTTTTTTTCCCCCCCCTCCCTTCCCATTTCTTTATCTCT
CAAACCCCACTTTATTTCTTTCCTTTTTCTTCCTCCCCCTCTTTTTTTCC
GCTATCCCTACTCTCCTTTTTATTTTTCATTTCCACCTTTTTTTCTTCCA
TTTCTCATAATATTTTATCTTTCTATTATTCTATTCTCCTCTATATATTT
TTCTCTTCATTCACCGCCACTCTCTATTTATTTATTTCATCATCTCTTCA
CCCTCCCCTTTCAATTTATTTTCTTCTCTTACACTTCTCTATTAACTATT
TTATATTATAACATTATTAATTATTTCCTTACTTTCTAACATACATCTAT
ATCTCTATTTTACTATCATTTATCTCCTCCCTCATTACTCTATCCTTTAT
ATATCCATCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_f13.g1 MSMg01no109_f13.g1 CHROMAT_FILE:
MSMg01no109_f13.g1 PHD_FILE: MSMg01no109_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:32 2005
         (201 letters)



>mm_chr5_55216436_55217037
          Length = 602

 Score =  368 bits (190), Expect = e-106
 Identities = 199/202 (98%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttgttcacaacgagagatagagatccatttcccttttgtgagatgtgaacatcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttgttcacaacgagagatagagatccatttcccttttgtgagatgtgaacatcttg 260

                                                                       
Query: 61  ttttgccagcaccatttgcatgcctttggcatgtttgtgcaaactcagatgattgtgact 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ttttgccagcaccatttgtatgcctttggcatgtttgtgcaaactcagatgattgtggct 320

                                                                       
Query: 121 atatgcttcatggatccatgtctgttttattccatgactgatgctgttttgttatcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgcttcatggatccatgtctgttttattccatgactgatgctgttttgttatcatgc 380

                                 
Query: 181 ttcttttttta-tcatttgata 201
           ||||||||||| ||||||||||
Sbjct: 381 ttctttttttaatcatttgata 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 602
Length adjustment: 8
Effective length of query: 193
Effective length of database: 594
Effective search space:   114642
Effective search space used:   114642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)