BAC Information

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BAC

Clone NameMSMg01-110B04
Chromosome5 (Build37)
Map Location 115,055,596 - 115,056,200
singlet/doubletsinglet
Overlap geneBC057022
Upstream geneCmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk
Downstream geneTrpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110B04.T7 (MSMg01no110_b04.b1)MSMg01-110B04.TJ (MSMg01no110_b04.g1)
ACCAG323091AG323092
length736712
length of high quality
(start - end)
478 (41 - 518)605 (70 - 674)
definitionCHROMAT_FILE: MSMg01no110_b04.b1 PHD_FILE: MSMg01no110_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:31 2005CHROMAT_FILE: MSMg01no110_b04.g1 PHD_FILE: MSMg01no110_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATATTAATGCAAAGATTCTTCACCACGGCTCTAACTAACATTGGAGTCTG
ATAACACTCAGTGGTGGGTGAGTGGCTGCCTTGAACACTGTAAGGCACAG
CGAGGTCGCTGGCCTCTCCCCAATGCCATGCCAACAGCACCCACCTCTAA
AGTCAACCCAACCCAAAACGTCTTGTCTCCTTGCATTCCCAAATATTCAC
TATCATCTTCATCTGAGAACCACTGATTTACAGAGGTGGGAAGAAAAGAA
AAAAAAAAAAAAAGCACTTCAGAACAGGAAGGTCCTAAGGAGTCTGAGCA
GCAGAGATTCTCAAACCAACCACCCTGGGGAGCTCGTTAAAACCCCGATT
CCTAGGCCCAGCCGCAGCCCCATCAATTTAGACAAGTACTGGGTTTTCCG
TCGTCACTGCCTCCATCCTCATCCAATGGGTAAGGAAAAGTGGGGTCCCC
CCAACGCAACTGCTTTGCCCAAGGTCACAAGAGAGTTAGAACCAGGCCAC
CGAAGCCAACCAAGCTCTTCCCCAGAACCAGGGTCTTGTGGAAGTAACGC
TGTGTCTCTTCTAAGCACATATAGCCCACATGGTGAATTCCTGCCGCCAG
TGAAACCTTGACATATAATTATTTTGTACCCGCCTCTTCCCTTAACCCCC
AACGCCCCCCGCCCCCCTGCTCCCCCCTTCAACTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGGTTGGCAGCTCCATACTCCCCCTTGAAC
AGATATCCCAATTGCATACCAGCATTAGCAAGAACCGAAGCTGCCTAAGG
TCTGCGTGGTCAGAGTGAAGCCAGAGAACCAACGCTGGTCCCTTAGCTTC
TCCGTGCTGTGGACCCCACAGCGGAGCCCCGCCCTCTCTCCCCTGCCAGG
CAGCAGAGTGCGAAGCCATCTCTTGTCTCCCTGAGGCAACATTAAACCCC
ACTCAGAGGGCTGGTTTTAATTGGCTTAATATACTCGTTAATAACCGCAT
CTATTTAACGCACCTGTAAAAGGCCCATAACATTAACTTAATGGCAGCGA
CAGTTCTCCTCAGCACTTCCTGCCAGCCTTTTAAATCTCCAGACAAGCCT
TTAATGGGGGCTTCATGGATGGAGATGGATTGGGAGAGAGACAAGCAGGG
AGAGGCAGCCTGGGTCACCCTTGCTTGATGGCATCCCTGTGTGTCTAACC
TTTCCTGAGAAACCAGGCCTCCTCCCACCACAGTGGTCCCAGGAGGGCAC
AGTATCTGGCCCAGAGGAAACATGTGACAGATACTGTCTGTGCATTCAGG
GCCTGTGACAGGAAGGGAGGCTGTCGAGGAAGAAGTGGGTAGTACCTCTG
ATGTCGCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_b04.g1 MSMg01no110_b04.g1 CHROMAT_FILE:
MSMg01no110_b04.g1 PHD_FILE: MSMg01no110_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:31 2005
         (605 letters)



>mm_chr5_115055396_115056400
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggttggcagctccatactcccccttgaacagatatcccaattgcataccagcattagc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tgggttggcagctccatactcccccttgaacaggtatcccaattgcataccagcattagc 260

                                                                       
Query: 61  aagaaccgaagctgcctaaggtctgcgtggtcagagtgaagccagagaaccaacgctggt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaccgaggctgcctaaggtctgcgtggtcagagtgaagccagagaaccaacgctggt 320

                                                                       
Query: 121 cccttagcttctccgtgctgtggaccccacagcggagccccgccctctctcccctgccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttagcttctccgtgctgtggaccccacagcggagccccgccctctctcccctgccag 380

                                                                       
Query: 181 gcagcagagtgcgaagccatctcttgtctccctgaggcaacattaaaccccactcagagg 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcagagtgtgaagccatctcttgtctccctgaggcaacattaaaccccactcagagg 440

                                                                       
Query: 241 gctggttttaattggcttaatatactcgttaataaccgcatctatttaacgcacctgtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggttttaattggcttaatatactcgttaataaccgcatctatttaacgcacctgtaa 500

                                                                       
Query: 301 aaggcccataacattaacttaatggcagcgacagttctcctcagcacttcctgccagcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggcccataacattaacttaatggcagcgacagttctcctcagcacttcctgccagcct 560

                                                                       
Query: 361 tttaaatctccagacaagcctttaatgggggcttcatggatggagatggattgggagaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaatctccagacaagcctttaatgggggcttcatggatggagatggattgggagaga 620

                                                                       
Query: 421 gacaagcagggagaggcagcctgggtcacccttgcttgatggcatccctgtgtgtctaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacaagcagggagaggcagcctgggtcacccttgcttgatggcatccctgtgtgtctaac 680

                                                                       
Query: 481 ctttcctgagaaaccaggcctcctcccaccacagtggtcccaggagggcacagtatctgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttcctgagaaaccaggcctcctcccaccacagtggtcccaggagggcacagtatctgg 740

                                                                       
Query: 541 cccagaggaaacatgtgacagatactgtctgtgcattcagggcctgtgacaggaagggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccagaggaaacatgtgacagatactgtctgtgcattcagggcctgtgacaggaagggag 800

                
Query: 601 gctgt 605
           |||||
Sbjct: 801 gctgt 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)