BAC Information

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BAC

Clone NameMSMg01-110E02
Chromosome5 (Build37)
Map Location 85,742,933 - 85,743,319
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110E02.T7 (MSMg01no110_e02.b1)MSMg01-110E02.TJ (MSMg01no110_e02.g1)
ACCAG323228AG323229
length721738
length of high quality
(start - end)
384 (82 - 465)307 (84 - 390)
definitionCHROMAT_FILE: MSMg01no110_e02.b1 PHD_FILE: MSMg01no110_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:47 2005CHROMAT_FILE: MSMg01no110_e02.g1 PHD_FILE: MSMg01no110_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCACCCCCCCCGACTCTATAATTGCGGCCGCTTTACGACTCCTATTC
CGAGAGGATCCGCGGAATTCCCTCACCAACGATGCCAAGATCCTGGGTGT
GCTAGGGCCCACTGAGTTTGTGCCCAAAATGGTGCGCCGCTGGTGCCAAC
CATAAGGAACCCCCAACTGCTGGTTGGGTGGGTTTCCTTTGTTCCTGTTC
CTGCTGGCACAAGACCCTCCAGGAATTTTTGGAACAGATGTTGTGTTCTG
CTCACCAGTGATCTCAAGATCCTGAGTTTGCTAGGGTGCCTGCAGTGTGG
AGAGTCCTCTGGGGACCTTGGGATTCTCTGCCGATTTTGTGCCCAATATG
GCTCATGAGGATTATCATGTTTTAAATCCCAGTAGTCATCTTCATATATA
CAACTCGATAATTTTTCAAGAACACCGGCTTTCAATATCTTGAAAAGAAG
CCCTATATATTTCAGAATTCACATTCAACTCAACCAGCAGTTACCTGATT
CTCTCAATCAGACCTTTGGAGCAGTACTTATCACAGAGACCCTGATTTAT
TTTGAGAATAGCCTATCTCGTATTAGTAAAACGAAGGCTGGTATTTTTGC
TCCAAATCTGTATCAAGATAAATGTGAAGCCCACACTTATTGTAAAGAAA
ACCCTATGAAACTTTCCTGAATTCTTCTTATTATACATTTACCTACGAAA
ATTTATTTGTCTTACCAATCC
CTTCATTCTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTGCAGAGACCCCA
AACAAGACCCCATTATTTTTTAAACTCAACTTAGTCCCTAAGGTGGTGAG
GAATTATTGTTGGGATAATCTCTTGTGTATTGTGTAAAGGCTGTCTTTGC
ATTATTCAAAGACTGATTTCTGTACTGGCAGAGATTTGAGTACAGGCTGT
GCTTTGGCATTGTTATTTTTAGGAAGCGTCACCTGTCTCAATTTTTGTAA
ACATCTTCTCCATTCCTTTCTTATTGGTTTAGTAAAGAGCTGAATTGCCT
CTAACAAAGCATGAGGGTGCGTAGGTAGACAAAACTTCCAAGCAGAGATT
GGAACTCTGGGAAAGAGTTCAGAGGCCACACACAGGAGAAAGCAGGTATC
CAGACTGAGGTAGAGGTAACAGGCCCCAGGGCATGAATGTGCTAGGTGGC
CAGTTCAACTTATATGACCTAATTAATAGTTTGCCTATCACCCACCAAAC
TTTCATAAATTTTAAAAACTCTTCCATGCCATTACTTGGGTGCTCTGGTG
ACTTGAGACATTTTGCCCATTATTTATCTCCCTCGGAAGGTAGTCTTAAC
TATACCATGTATCCTTTTATTAGACCTCACCTCTTACTCTAATAAGGATC
CTCGGCCATATTTTCTCTATCACCACCTCTTTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_e02.b1 MSMg01no110_e02.b1 CHROMAT_FILE:
MSMg01no110_e02.b1 PHD_FILE: MSMg01no110_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:47 2005
         (384 letters)



>mm_chr5_85742733_85743519
          Length = 787

 Score =  679 bits (351), Expect = 0.0
 Identities = 377/387 (97%), Gaps = 3/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccaagatcctgggtgtgctagggcccactgagtttgtgcccaaaatggtgcgccgct 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||
Sbjct: 201 atgccaagatcctgggtgtgctagggcccactgagtttgtgcccaagatggtgcggggct 260

                                                                       
Query: 61  ggtgccaaccataaggaacccccaactgctggttgggtgggtttcctttgttcctgttcc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgctaaccataaggaacccccaactgctggttgggtgggtttcctttgttcctgttcc 320

                                                                       
Query: 121 tgctggcacaagaccctccaggaatttttggaacagatgttgtgttctgctcaccagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctggcacaagaccctccaggaatttttggaacagatgttgtgttctgctcaccagtga 380

                                                                       
Query: 181 tctcaagatcctgagtttgctagggtgcctgcagtgtggagagtcctctggggaccttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcaagatcctgagtttgctagggtgcctgcagtgtggagagtcctctggggaccttgg 440

                                                                       
Query: 241 gattctctgccgattttgtgcccaatatggctcatgaggattatcatgttttaaatccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattctctgccgattttgtgcccaatatggctcatgaggattatcatgttttaaatccca 500

                                                                       
Query: 301 gtagtcatcttcatatatacaactcgataatttttca---agaacaccggctttcaatat 357
           ||||||||||||||||||||||||| |||||||||||   |||| |||||||||||||| 
Sbjct: 501 gtagtcatcttcatatatacaactcaataatttttcattaagaagaccggctttcaataa 560

                                      
Query: 358 cttgaaaagaagccctatatatttcag 384
           |||||||||||||||||||||||||||
Sbjct: 561 cttgaaaagaagccctatatatttcag 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 787
Length adjustment: 9
Effective length of query: 375
Effective length of database: 778
Effective search space:   291750
Effective search space used:   291750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)