Query= MSMg01no110_k14.b1 MSMg01no110_k14.b1 CHROMAT_FILE:
MSMg01no110_k14.b1 PHD_FILE: MSMg01no110_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:19 2005
(446 letters)
>mm_chr5_75890209_75891055
Length = 847
Score = 789 bits (408), Expect = 0.0
Identities = 432/440 (98%), Gaps = 1/440 (0%)
Strand = Plus / Plus
Query: 5 gaattcc-accaaatcgtgtatttaactcacgctgatgcagaagacagccaagaggcaac 63
||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaccaaattgtgcatttaactcacgctgatgcagaagacagccaagaggcaac 264
Query: 64 aggaacagcgcctgggagcttcagggcctgtccaaccgtgggtggacatctcagtcctat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaacagcgcctgggagcttcagggcctgtccaaccgtgggtggacatctcagtcctat 324
Query: 124 aagaagatactggaggacagtcccatcaatactttctatcttttgcagctgaagtattct 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaagataccggaggacagtcccatcaatactttctatcttttgcagctgaagtattct 384
Query: 184 tcctggtgctggctctcaggcacaagggttctcctagatgctataaatagtgctacctta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctggtgctggctctcaggcacaagggttctcctagatgctataaatagtgctacctta 444
Query: 244 ttcaggttttaaagcaaaaagggaaaagttttatatttttgtcattgttattcttaaaag 303
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcaggttttaaagcaaaaaggaaaaagttttatatttttgtcattgttattcttaaaag 504
Query: 304 caagttacaataagtgtactatgaatttagttttaagaaatccactgatgagcccaagtg 363
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 caagtcacaataagtgtactatgagtttagttttaagaaatccactgatgagcccaagtg 564
Query: 364 tggtggcgttcacctgtaaccccaacatttgagaaatagaagcaagaggatcatccttca 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggtggtgttcacctgtaaccccaacatttgagaaatagaagcaagaggatcatccttca 624
Query: 424 gctctgtagagagttcaagg 443
||||||||||||||||||||
Sbjct: 625 gctctgtagagagttcaagg 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space: 364932
Effective search space used: 364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k14.g1 MSMg01no110_k14.g1 CHROMAT_FILE:
MSMg01no110_k14.g1 PHD_FILE: MSMg01no110_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:19 2005
(496 letters)
>mm_chr5_76026161_76027055
Length = 895
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1 tctaagatgtctggcattcaaatagatatactaaattaatggcacgccacacaggatgaa 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 485 tctaagatgtctggcattcaaatagatacactaaattaatggcatgccacacaggatgaa 426
Query: 61 ttatcatcttatgagacataaaggacagtaatggtgacaacactggagcagagaaagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttatcatcttatgagacataaaggacagtaatggtgacaacactggagcagagaaagatg 366
Query: 121 tttacaggtgtttactgctgtctttttttcccctcagagtaaaagagatttgggttctat 180
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 365 tttacaggtgtttactgctgtctttttttcccctcagagtgaaagagacttgggttctat 306
Query: 181 gctaacagctggtttctgtatctgttcccctcctatttcaatgtctataaccattctagt 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 305 gctaacagctggtttctgtatctg-tcccctcctatttcaatgtctataaccattctagt 247
Query: 241 atctagagattctatttcgatagagatgtaatgctgcacacatcaagggtccagagagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atctagagattctatttcgatagagatgtaatgctgcacacatcaagggtccagagagat 187
Query: 301 ggctccatggggggaggcactgcccctacgcctgccaacctgaattcgatcctaggaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggctccatggggggaggcactgcccctacgcctgccaacctgaattcgatcctaggaccc 127
Query: 361 acacggtagaaggagagagctcacttccttaaattgtcctacaacctttccattcacaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acacggtagaaggagagagctcacttccttaaattgtcctacaacctttccattcacaac 67
Query: 421 tgcggcgcggatgaactcgtgactgactttgtagtcacactatggtgtgtatggacatgt 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tgcggcgtggatgaactcgtgactgactttgtagtcacactatggtgtgtatggacatgt 7
Query: 481 gag 483
|||
Sbjct: 6 gag 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
