BAC Information

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BAC

Clone NameMSMg01-110N04
Chromosome5 (Build37)
Map Location 55,361,735 - 55,362,087
singlet/doubletsinglet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110N04.T7 (MSMg01no110_n04.b1)MSMg01-110N04.TJ (MSMg01no110_n04.g1)
ACCAG323650AG323651
length736716
length of high quality
(start - end)
357 (42 - 398)622 (71 - 692)
definitionCHROMAT_FILE: MSMg01no110_n04.b1 PHD_FILE: MSMg01no110_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:32 2005CHROMAT_FILE: MSMg01no110_n04.g1 PHD_FILE: MSMg01no110_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAGAAATCACGGGTTACAGATCCAATTAGTACCTACAGCGAAGGAAAG
GGTGGATAATGTGGAGTAGTTAAATATCAATAAGAACCTTCAAGTAGAAA
GCTCTCTGTGATATGCTGAGATGAATGGCCATAAGGTTTCCATGGGGACA
GTTGGGTGCAAGGAAGATATATCAATGATATAAAGAGATGAAGAATGGCA
GCGAGAGTTTGAAAGATGGAGAGGAATTTCTGTTACTCTTTTATTTAAAG
GATAGGGAGGGAAAGGAGGAGGAAGACACAGAATAAAAGAGCTTTCCAGA
TGTCACACATTAAAGGGAGTTAGATTTGCAGCCAGCCAAAAATAAATGCT
ACAAAGAGTAAGTAAAGAAGAAAGAGGGTTTCATTGACAAAGTGGATAAC
TTCTGGAGAATCTATTTTTAGCATCTAGGGTGACAGCTGGCCCTTCATTG
CATTGACTGCATGCTCTTTGAGTAAGCTGTCTGATTCTTATCGTCATCTG
TTTCTGGAGAGGCTTTCCCAACTCTGAATACAATCACTTGCTGCTGAATC
TCAATTCCTCATCCTGTCCACTCTCTCTCCCTCCTCTCACATTTCCTATT
TTGTTTTTTCTTGGTAACTTTTCTTTCTGGCCCTCTTTCTGTTGCTACCT
TGGTCCCTTCCCCCTTTTGTTGTTTCTCCTTTTTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTCCCTCCTCACCCTTCACCACCAGAGG
CAGGCAGAAGACAAGACATGAAATCATGAGAATAGGACAGCTGACCCTGC
TCCTCATCAACAGCAGCAAGGAGAACAGGCCTTGCATCTTGCCTGGGAAG
AGTAAAGCTGACCCTGGATGTGGAGGTAATGGGTGAACCATCCCTGAAAG
CATGTGTGTAGGAGACCTGGCAGTGCCTCTTATGTGCTGGGGGTGGCATG
AACAAGGGAGAGATGCCCTCCTACCCTCCCTCATCCCTCACCATTTATGG
CAGGCAGAAGAGTGAGCCCTGGGGTCATAAGAGTGGGAGAACTTGCTATG
GCCCTCACCAAGCACAACAATCAGGAGAGCAGGCCTTGTATACTGTTTAG
CCAGCAGGGTAAAGCTGGCTCTGATAGCAAAGGTTGCCTGTGAGCCAGCC
CTGAGGGCATGAGAGTGGGAAAGCTGGAGGACTGACCAGGTTAGTTACCT
CTAGGGTCCAGATCCAAAAATTTGAATTGGCCCACCCCAACATCTGCCCT
ATGGATCAACTGCTGGAGTGCATTAAAGGGGCAGTCTTATAGATTCACAA
CTACAGGATTCCTCATGACTTAAGGCAAGAGAGGATATTCAAGAGAAGTC
CCAGTGAGGGTCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_n04.b1 MSMg01no110_n04.b1 CHROMAT_FILE:
MSMg01no110_n04.b1 PHD_FILE: MSMg01no110_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:32 2005
         (357 letters)



>mm_chr5_55361532_55362287
          Length = 756

 Score =  661 bits (342), Expect = 0.0
 Identities = 351/354 (99%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagagaaatcacgggttacagatccaattagtacctacagcgaaggaaagggtg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggaattcagagaaatca-gggttacagatccaattagtacctacagcgaaggaaagggtg 498

                                                                       
Query: 64  gataatgtggagtagttaaatatcaataagaaccttcaagtagaaagctctctgtgatat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gataatgtggagtagttaaatatcaataagaaccttcaagtagaaagctctctgtgatat 438

                                                                       
Query: 124 gctgagatgaatggccataaggtttccatggggacagttgggtgcaaggaagatatatca 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 gctgagatgaatggccataaggtttccatggggacagttgggggcaaggaagatatatca 378

                                                                       
Query: 184 atgatataaagagatgaagaatggcagcgagagtttgaaagatggagaggaatttctgtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atgatataaagagatgaagaatggcagcgagagtttgaaagatggagaggaatttctgtt 318

                                                                       
Query: 244 actcttttatttaaaggatagggagggaaaggaggaggaagacacagaataaaagagctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 317 actcttttatttaaaggatagggagggaaaggaggaggaagacacagaagaaaagagctt 258

                                                                 
Query: 304 tccagatgtcacacattaaagggagttagatttgcagccagccaaaaataaatg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tccagatgtcacacattaaagggagttagatttgcagccagccaaaaataaatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 756
Length adjustment: 9
Effective length of query: 348
Effective length of database: 747
Effective search space:   259956
Effective search space used:   259956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)