BAC Information

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BAC

Clone NameMSMg01-110O14
Chromosome5 (Build37)
Map Location 90,772,570 - 90,773,176
singlet/doubletsinglet
Overlap geneAnkrd17
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110O14.T7 (MSMg01no110_o14.b1)MSMg01-110O14.TJ (MSMg01no110_o14.g1)
ACCAG323717AG323718
length732710
length of high quality
(start - end)
667 (66 - 732)239 (137 - 375)
definitionCHROMAT_FILE: MSMg01no110_o14.b1 PHD_FILE: MSMg01no110_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:38 2005CHROMAT_FILE: MSMg01no110_o14.g1 PHD_FILE: MSMg01no110_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCGCCCCCGGTCTATAATTGCGGCCGCTAAACGACTCCTATATCGXXX
XXXXXXXXXXXXXXXTAGATTGAGCTACTGTTCTCTGTTATCCTGGACTA
CATAGTGAGGCTCTCTAAAAACAAACAAAAATCTCCACAGTAAATAGAAA
GTAAATCACAAGACATAAGTTAATGCATTTAATCATATTTTACTTAATAA
GAATATACTCATGTTCATGAAGGTTCTGGAATTTTAGTATTATTGAATTC
TTTCAAAGATATCTATTTATTCACAGTCAATTTCAAGTAAAGAAAGCCCC
AGCACCAAACCTTGGATGCAATTTGCATTTTAACAGTAGATTACATTTTT
CAGACCAGATTATTTTATCCCATTCTTCTGTTCTCCAAATGAATACATTT
TGATACACTTCGCATTGTAGCACTTTAAACTAATTAATTGAAATTAATAT
AGCAAGAATTTATATATATAAAGGGAAGAAGTTAAACATAAGGTGTAGCT
TCTGAGCCTTTAGTATAAGCCAAGATACTTTCGTGAATAATGCTGATTTC
AGATCTAAGATTTGTCATAGATTTGTGTTAGTAATATTTTGTACTTGTAG
AGAAACAATATCACTATCTAGTTATATAATACTGAAACATTTTTATACAT
ATGTCTCTTTAGAAAGTTACTATATGGTTTATTCTGCATTATACAGAGAA
TATATACTGAAGGCTGTTAAATATAGTGTTTG
CACCACAATATAACGATGAAGTGGGAGGCCTGGCGGCCGCCTTTTTCTGA
CCGGGGGGTGAACTATAGAATTTCCCAAAAAATTCAGGACCTCTGCTTGC
TCTGGTCAATCCCACTCACTCCAGCCTAAAGCACGTGTTTATTATTATAT
CTAAGTACACTGTAGACACACCAGAAGAGGGCATCAGATCTCATTACGGA
TAGCTCTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTCAG
AAGAGCAGTCATTGCTCTGAGCCATCTTTCTAGCCCCAGTTGGCATCTCT
AATCCTGACATTAGGCAGCTGTATCATAACTTGGTTTCTCTGGACACCCA
TTCGGGGAGAGCAATAGATCTTCTGAACCCTGTGTACTCCCATGTCTTCT
GGCATAATGAGTTTGTAATCTGCTATTCTCCACCATCTGTAACACACTGG
GACATGGGCAAATTCTTAGCTCAGACTGTGTCACCTTTTGAATACTTAGG
GTGGTAAGGGAGTATAGGATCCCCCAGATGCAGGGAAGTCGGGGGCAAGA
GAGGTCTGACCTACAGGGTAGCATGGCTGGCTGCTTCACCTGCCCTATCG
TTGACTTTTGAAACTGGGTCCTTTCTTTCCTGGCGTCTCAAGTAGCGAAA
GACAGCCTTTTTTGTTTTTCCTTGTACAGCCCTTATTGTGTACAACACCC
CCTTTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_o14.b1 MSMg01no110_o14.b1 CHROMAT_FILE:
MSMg01no110_o14.b1 PHD_FILE: MSMg01no110_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:38 2005
         (667 letters)



>mm_chr5_90772570_90773638
          Length = 1069

 Score = 1065 bits (551), Expect = 0.0
 Identities = 583/607 (96%), Gaps = 22/607 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagattgagctactgttctctgttatcctggactacatagtgaggctctctaaaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tagattgagctactgttctctgttatcctggactacatagtgaggctctctaaaaacaaa 548

                                                                       
Query: 61  caaaaatctccacagtaaatagaaagtaaatcacaagacataagttaatgcatttaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caaaaatctccacagtaaatagaaagtaaatcacaagacataagttaatgcatttaatca 488

                                                                       
Query: 121 tattttacttaataagaatatactc--atgttcatgaaggttctggaattttagtattat 178
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 487 tattttacttaataagaatatactcaaatgttcatgaaggttctggaattttagtattat 428

                                                                       
Query: 179 tgaattctttcaaagatatctatttattcacagtcaatttcaagtaaagaaagccccagc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgaattctttcaaagatatctatttattcacagtcaatttcaagtaaagaaagccccagc 368

                                                                       
Query: 239 accaaaccttggatgcaatttgcattttaacagtagattacatttttcagaccagattat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 accaaaccttggatgcaatttgcattttaacagtagattacatttttcagaccagattat 308

                                                                       
Query: 299 tttatcccattcttctgttctccaaatgaatacattttgatacacttcgcattgtagcac 358
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 307 tttatcccattcttctgttctccaaatgcgtacattttgatacacttcgcattgtagcac 248

                                                                       
Query: 359 tttaaactaattaattgaaattaatatagcaagaatt--------------------tat 398
           |||||||||||||||||||||||||||||||||||||                    |||
Sbjct: 247 tttaaactaattaattgaaattaatatagcaagaatttatatatatatatatatatatat 188

                                                                       
Query: 399 atatataaagggaagaagttaaacataaggtgtagcttctgagcctttagtataagccaa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atatataaagggaagaagttaaacataaggtgtagcttctgagcctttagtataagccaa 128

                                                                       
Query: 459 gatactttcgtgaataatgctgatttcagatctaagatttgtcatagatttgtgttagta 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gatactttcgtgaataatgctgatttcagatctaagatttgtcatagatttgtgttagta 68

                                                                       
Query: 519 atattttgtacttgtagagaaacaatatcactatctagttatataatactgaaacatttt 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  atattttgtacttgtagagaaacaatatcactatctagttatataatactgaaacatttt 8

                  
Query: 579 tatacat 585
           |||||||
Sbjct: 7   tatacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space:   695763
Effective search space used:   695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)