BAC Information

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BAC

Clone NameMSMg01-111A18
Chromosome5 (Build37)
Map Location 114,824,935 - 114,825,526
singlet/doubletsinglet
Overlap geneKctd10
Upstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h
Downstream geneUbe3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A18.T7 (MSMg01no111_a18.b1)MSMg01-111A18.TJ (MSMg01no111_a18.g1)
ACCAG323816AG323817
length1,1591,387
length of high quality
(start - end)
590 (82 - 671)---
definitionCHROMAT_FILE: MSMg01no111_a18.b1 PHD_FILE: MSMg01no111_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:52 2005CHROMAT_FILE: MSMg01no111_a18.g1 PHD_FILE: MSMg01no111_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGNNGGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTGAAAGAAGGTCCCATTAAATGCTCTGTGTATAGCCCTACAGGA
AGGTAGAGCCTCCCAGCACGCCATCCAGGGACTGTTGATGGCAATGACAG
ACATCACATAACACAGAGACAGACTTATGCCTACGGGGTCATTGGCAAGG
TTGGCCCGTGAGACGAGGTGTGGATTGGGGTGAGCTGAGAGGGATGTGTT
CCTCTCCTGGAAGGTCACCGTCCAGCAGCCGCCAGCTGTCCTCCTGGTCT
AGTTAGCCCCTGATTTACAGAGAAACCAGAAATCCAAGTTTTTTTTTCTT
TGAGCTCTTGAGTCATCTGAGTTGGGAGTCCAGTGATTCCACGGCCGAAT
CTCAGCATCGGGATGTTGTTGTTCAGCCTGGAGTTAAAGGAGCAGGGCAG
GTAGGCAGGCGTGCTGACCCTGTCTTCTCTCCGGCAGGAAGAGATGTCAG
GAGACAGCGTGGTGAGCTCAGCGGTGCCAGCGGCTGCCACTCGCACCACT
TCCTTCAAGGGTGCCAGCCCCAGCTCCAAGTACGTGAAGCTGAACGTGGG
GGGCGCTCTCTACTACACCACCATGCAGACGCTCACCAAGCAGGACACCA
TGCTGAAGGCCATGTTCAGTGGACGCATGGAAGTGCTCACGGACAGCGAA
GGTGAGTCCCCTGCCATGCAGGGTGCTAATGTGTCATTGTGCCAAGTGCC
ACAGATATACTAGTGGTTTAGAGGCCCAGCATTCAAGGCACTCAGACACA
CTGAAGCCCTGAGAGTCTTGTGGATATAAAACTCAGTCTGGAGGGTGTTG
TCAGGGAGGGCTTTCTGAGGAAGTAGCGCTGGAGCTGAGACCAGACTGTG
AAGTATCATAGATAAGGACCCTCGGTCTTGACCTGGCAGGTCTGCCGGTT
GACTTTTGACAAGATTTCTCTTCCTTTGCTTTCCTAAAAACGGGGCCCAG
GCACCCTTCCTGTGTTTCATTTCCCTTTGCCATTAAGGGCCCTGCTTGGG
TTGGCCTCTGTTAAATAAATTGTTTTTTATTAACTGTTAATGCCTCTCCT
TTTTTTATTGCCTCCCCCCCCTCTCCTTTCATTGTTGGTTTTTTTGCAAA
AATAAAAAA
TTTAACATCCTAGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACTTCAAAATCCCCATGTAGNCTTTTGTAATCCATG
GTTTTATCCCCTTAAATATAGCCTTGGGGGCCTGTTTAGTGTGTTTAGTG
TGTGTGTGTATGTCCCCACCACTTCCCCTCACTCACTCACACCAAACACC
CCCTCCAACAACACAAACCCTACACACCACCCCTCCTCAACCATCACTCC
CACACCCATCCCCCCACCCCCCTCCTACTCTCTCCCCTCTCCCACCCACT
CATCCCCCCACACAAAATCCCCACCCCAACACATCCCTCACCCCCTTTCA
CCTCCCCACCCCACCCCACCACCACCCTCTCACCTCCAACACACCCCATC
CCAACTCACTCTCTCCACCCACTATTTTTTCTTCTCCCCCCCCCCCCTCC
CACCTCAAATCTAACCATTCCTCATCAACTCCCCCCCTTTTATTTCCCCC
CCCCCCCCCCTTCACACACCTACCCCTTCTCACACACCCAACCTCTCACC
CACCCTCCACACCCCCTAATCCCCTCCACATCTCTCCTCCACCACCCTAT
CTCTCCCATTATCCATCACCATAACCCCTATTAACACATCCCCCCCCCAC
TCCTCCACCCCCATAACTCACCACACCACTCATCAATCCCCCCTCTAACC
TACCCCTCCTTCTCCTTCTCCTCCTCTTTCACCCTCTCACCCCCCCCATC
TCCAACTCTCCCCCTTACCCACCCTACTCCCCCATTCCTCAAATTCCCCT
CCCCCCTCCCCATCCCCTCTCTTCACACACTATACCCCCATATCCACTCC
ACTCCCTCACACATACCCCACCCATCTCCCCATCCTCACCAGTACTCCAC
CCTCACAATCTCCTTCTTCCCCATCTCACCTCTCATTACACCTCTAACCA
CCACCACCACACACCCCCACACATCAAAACCAACCAACACTATTCATTCA
CCCTACATCACCCCACTAACACTCCCTCCCCTCCCTCACCCTCCCTCCCA
CTCCCCCTACACCCCCTATCCCCCACCTACCCCCACCCCCTCCCTCTTCT
CTCACCCCCCCCACTACCCCCTCCCCCTCTAACACCAACCCCCCCCACCA
TCATACCCACCCACTCCCTCCCGCCTCACACTTCTCCAACCTCACATATC
CCTCCATCATACCTCCCTCTACTTACCACATCTGCACTTTTCCCCTCCAC
CATACACCCCCTCTCCACATCAACTCCCCCACCCTACACTACACATTCCA
CTCCTCACCCTTCCTCACCCCACACCTCTCCACACCCTCTCCCCTACCTC
AACCTCCACCCTACTAACTCCTCCACCCCCTATACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a18.b1 MSMg01no111_a18.b1 CHROMAT_FILE:
MSMg01no111_a18.b1 PHD_FILE: MSMg01no111_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:52 2005
         (590 letters)



>mm_chr5_114824735_114825726
          Length = 992

 Score = 1056 bits (546), Expect = 0.0
 Identities = 580/592 (97%), Gaps = 2/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtatagccctacaggaaggtagagcctcccagcacgccatccagggactgttgatgg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 792 tgtgtatagccctacaggaaggtagagcgtcccagcacgccatccagggactgttgatgg 733

                                                                       
Query: 61  caatgacagacatcacataacacagagacagacttatgcctacggggtcattggcaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 732 caatgacagacatcacataacacagagacagacttatgcctacggggtcattggcaatgt 673

                                                                       
Query: 121 tggcccgtgagacgaggtgtggattggggtgagctgagagggatgtgttcctctcctgga 180
           |||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct: 672 tggcccgtgagatgaggtgtagattggggtgagctgagagggatatgttcctctcctaga 613

                                                                       
Query: 181 aggtcaccgtccagcagccgccagctgtcctcctggtctagttagcccctgatttacaga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aggccaccgtccagcagccgccagctgtcctcctggtctagttagcccctgatttacaga 553

                                                                       
Query: 241 gaaaccagaaatccaagttt--ttttttctttgagctcttgagtcatctgagttgggagt 298
           ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||
Sbjct: 552 gaaaccagaaatccaagttttgttttttctttgagctcttgagtcatctgtgttgggagt 493

                                                                       
Query: 299 ccagtgattccacggccgaatctcagcatcgggatgttgttgttcagcctggagttaaag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccagtgattccacggccgaatctcagcatcgggatgttgttgttcagcctggagttaaag 433

                                                                       
Query: 359 gagcagggcaggtaggcaggcgtgctgaccctgtcttctctccggcaggaagagatgtca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagcagggcaggtaggcaggcgtgctgaccctgtcttctctccggcaggaagagatgtca 373

                                                                       
Query: 419 ggagacagcgtggtgagctcagcggtgccagcggctgccactcgcaccacttccttcaag 478
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 372 ggagacagcgtggtgagctcagcggtgccagcggctgccacccgcactacttccttcaag 313

                                                                       
Query: 479 ggtgccagccccagctccaagtacgtgaagctgaacgtggggggcgctctctactacacc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggtgccagccccagctccaagtacgtgaagctgaacgtggggggcgctctctactacacc 253

                                                               
Query: 539 accatgcagacgctcaccaagcaggacaccatgctgaaggccatgttcagtg 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 accatgcagacgctcaccaagcaggacaccatgctgaaggccatgttcagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 992
Length adjustment: 10
Effective length of query: 580
Effective length of database: 982
Effective search space:   569560
Effective search space used:   569560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)