BAC Information

Click to search

BAC

Clone NameMSMg01-111D13
Chromosome5 (Build37)
Map Location 29,076,403 - 29,077,114
singlet/doubletsinglet
Overlap genenone
Upstream genePaxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111D13.T7 (MSMg01no111_d13.b1)MSMg01-111D13.TJ (MSMg01no111_d13.g1)
ACCAG323949AG323950
length1,1351,177
length of high quality
(start - end)
712 (74 - 785)640 (79 - 718)
definitionCHROMAT_FILE: MSMg01no111_d13.b1 PHD_FILE: MSMg01no111_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:15 2005CHROMAT_FILE: MSMg01no111_d13.g1 PHD_FILE: MSMg01no111_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCACTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TTTCTGCCTCCTGGACGTTCAGTTCCCATTTCCTGCCAAAGCCATAGGCA
ACTACCTTTATTATTGACATGTGCCACATTCATACTGACATCGTATGAAT
TCTCTGCAACCATATTTATTATAGTGTCCCTGTAATTTCTCAGGATATAG
GACACTAGGGGAAGCCATATTGTACCAGGTAACCCTTGATTTGGGGCTTG
ATCATGCCCTTCTGATATTCCTGGAGCTCTGGTGACTATGTGTTTCATTC
TGAGGAAAATGTATACTTCAGACATGCAATGTAGGACATGAGAAGAATTT
GAAAAGAGACCTCAAGGGTTAATGAGAGCAGCCCAGTGCTCTGAAATTCT
GAGGCTATAGATAGGTGAGGATATGGGTCACCTTTAATGGTAGCCTCCTA
GGTTTCCATTCCCATGGACTGCTTGCTCCAACCAGTGTTCAGGCAGGCTA
GTGACGAAATTCATCTGTACCCATGCTATCAGATACAGTGCATATGCATC
CCACTTGACTACTTAAACTCCCACTTACATGAATGAAAACTAAATGCAAT
TTGTATTTTCCATTTCTCAATCATAGTAACTACACTTTAAGTGATCAAGA
GCTAAATATGGCCAGCGGCTATGATATTAGACAGGCAGAGGAGGCTCTTA
GCACACAGTTCTGATGGGCAAGCAGTCTTCTCTCTGCAACTGAAACAAGC
TCCAAGGACAGAAGGTGTCACTCAACAGCAGTCATTCCCTTCCTGCAGTT
CTAGAGATGAAATCCAAGGTCAAAGTGCTTCATGGTGGATCCCATTCTTG
CTGAGAGCTGCTTCCTGACTTACAGAGAGTGGTCTCTTTGCTGTATTCCC
ACTTGGCCTATAGACCAGGAGCTCTCAGGGTAGGATAACCTTTCTCTGTC
TTCTCAGGGGACACTAATTCTATCATGAATGTGCCTTCTCAATGACCTTA
TTAAACCCCTATCACTTTCTAAAGGAACAAAGGCTTGGGCCCCCATATGG
GAATTTTTAAAGAAATAAACCCATTTTTAATCTGTTAAAAAATGGTGCCT
GCTGGTTTTGATAAGGAACTAAACCAATTAATGGC
NNNGGCCGAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCCTTTTAGCTGAGGAATACCGAATGGCAGAGAA
GCACTTGCCTAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAATAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATCAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAA
CACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCT
CCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGT
TTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGG
AATCAACCCATAATCAGCTACCAAACGCTTGACACCCTTGCATACCCTAA
CCAAGATTTTTATTTGAAAGGACGCAAAATGTACCTGTTTTCTTGTGAAG
AATATGCCGGGGGCCCCATTAAACACATAAAGTGGAAGGCTCCCAGTCCA
GCTAATGGTATGGAATCAATAGGGCTTCCCCAAGGGAGGAACTTAAAAAA
AAAGTTGCCCCAGGGTAGCTTCAATTTAAGGTGATTTTGGCTACCCCTTA
TTGGGTGGGAAACAACCTTTATTGAAGCCTTAATCCCGTTACCCTCGCGA
GAACCTTCTTGAACTCTCTAGCTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_d13.b1 MSMg01no111_d13.b1 CHROMAT_FILE:
MSMg01no111_d13.b1 PHD_FILE: MSMg01no111_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:15 2005
         (712 letters)



>mm_chr5_29076141_29077252
          Length = 1112

 Score = 1276 bits (660), Expect = 0.0
 Identities = 699/712 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccatttcctgccaaagccataggcaactacctttattattgacatgtgccacattcat 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 974 tcccatttcctgccaaagccataggcaactagatttattattgacatgtgccacattcat 915

                                                                       
Query: 61  actgacatcgtatgaattctctgcaaccatatttattatagtgtccctgtaatttctcag 120
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 914 actgacatagtatgaattctctacaaccatatttattatagtgtccctgtaatttctcag 855

                                                                       
Query: 121 gatataggacactaggggaagccatattgtaccaggtaacccttgatttggggcttgatc 180
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 854 gatataggacactaggggaagccatattgtaccaggaaacccctgatttggggcttgatc 795

                                                                       
Query: 181 atgcccttctgatattcctggagctctggtgactatgtgtttcattctgaggaaaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atgcccttctgatattcctggagctctggtgactatgtgtttcattctgaggaaaatgta 735

                                                                       
Query: 241 tacttcagacatgcaatgtaggacatgagaagaatttgaaaagagacctcaagggttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tacttcagacatgcaatgtaggacatgagaagaatttgaaaagagacctcaagggttaat 675

                                                                       
Query: 301 gagagcagcccagtgctctgaaattctgaggctatagataggtgaggatatgggtcacct 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gacagcagcccagtgctctgaaattctgaggctatagataggtgaggatatgggtcacct 615

                                                                       
Query: 361 ttaatggtagcctcctaggtttccattcccatggactgcttgctccaaccagtgttcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttaatggtagcctcctaggtttccattcccatggactgcttgctccaaccagtgttcagg 555

                                                                       
Query: 421 caggctagtgacgaaattcatctgtacccatgctatcagatacagtgcatatgcatccca 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 554 caggctagtgacgaaattcatctgtacgcatgctatcagatacagtgcatatgcatccca 495

                                                                       
Query: 481 cttgactacttaaactcccacttacatgaatgaaaactaaatgcaatttgtattttccat 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 494 cttgactacttaaactcccacttacatgaatgaaaactaaatgcgatttgtattttccat 435

                                                                       
Query: 541 ttctcaatcatagtaactacactttaagtgatcaagagctaaatatggccagcggctatg 600
           |||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||
Sbjct: 434 ttctcaatcatagtaactacactttaagcgatcaggagctacatatggccagtggctatg 375

                                                                       
Query: 601 atattagacaggcagaggaggctcttagcacacagttctgatgggcaagcagtcttctct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atattagacaggcagaggaggctcttagcacacagttctgatgggcaagcagtcttctct 315

                                                               
Query: 661 ctgcaactgaaacaagctccaaggacagaaggtgtcactcaacagcagtcat 712
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctgcaactgaaacaagctccaaggacagaaggtgtcactcaacagcagtcat 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)