Query= MSMg01no111_e05.b1 MSMg01no111_e05.b1 CHROMAT_FILE:
MSMg01no111_e05.b1 PHD_FILE: MSMg01no111_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:21 2005
(685 letters)
>mm_chr5_97180354_97181438
Length = 1085
Score = 1270 bits (657), Expect = 0.0
Identities = 675/683 (98%), Gaps = 4/683 (0%)
Strand = Plus / Minus
Query: 1 accaggtagtatctcatctgaacactatagaagaatgaaacctagaaccataacccaagc 60
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1017 accaggtagtatctcatctgaacactatagaagaatgaaacctaggagcataacccaagc 958
Query: 61 tcttggtgatgggaggaaaccaagtgtttctcaaatagaatattctccaccgagataggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tcttggtgatgggaggaaaccaagtgtttctcaaatagaatattctccaccgagatag-- 900
Query: 121 gtgtgtgtgtgtgtgtgtcagtggcacacttatatgataggaaataggacatctgtcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 --gtgtgtgtgtgtgtgtcagtggcacacttatatgataggaaataggacatctgtcata 842
Query: 181 tgaccattttaaatttcctacccagctatcctacacaggctatgtgtaggcaggagaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgaccattttaaatttcctacccagctatcctacacaggctatgtgtaggcaggagaagt 782
Query: 241 tctaaatcatactttacaaatcatgctaagtggctagatttcctcatgaacatttgtatg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 781 tctaaatcatactttacaaatcatgctaagtggctagatttccccatgaacatttgtatg 722
Query: 301 tggctgcttaacatcctttcaaaatcctaaagaatgggcattttttccccttcagcatct 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 721 tggctgcttaacatcctttcaaaatcctaaagaatgggcattttttccccttcagcgtct 662
Query: 361 ttcctacaatatgaatcattatagaatatatgaatttagtagtgacttttcaatcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttcctacaatatgaatcattatagaatatatgaatttagtagtgacttttcaatcttttt 602
Query: 421 aaaaagacatttttgtaaatgccaactctaaagacatatgcttaataagccaaagaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaaagacatttttgtaaatgccaactctaaagacatatgcttaataagccaaagaaaat 542
Query: 481 gaaggacccgaatgtgctgaagaattatgatagattatcatatgggtaacatatggtcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaaggacccgaatgtgctgaagaattatgatagattatcatatgggtaacatatggtcta 482
Query: 541 tctgatttcttttattaaatgaaaagctatttcttgagtaggcagtgaattctttctgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctgatttcttttattaaatgaaaagctatttcttgagtaggcagtgaattctttctgct 422
Query: 601 ttgagctgaaaccaaatatagacattcagactcaaagctaaggattgcatttgtagatgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgagctgaaaccaaatatagacattcagactcaaagctaaggattgcatttgtagatgt 362
Query: 661 tcttaaactcaggttctaacttt 683
|||||||||||||||||||||||
Sbjct: 361 tcttaaactcaggttctaacttt 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_e05.g1 MSMg01no111_e05.g1 CHROMAT_FILE:
MSMg01no111_e05.g1 PHD_FILE: MSMg01no111_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:21 2005
(733 letters)
>mm_chr5_97103878_97105009
Length = 1132
Score = 1284 bits (664), Expect = 0.0
Identities = 719/742 (96%), Gaps = 10/742 (1%)
Strand = Plus / Plus
Query: 1 gcctccattacgtaacaagttcaagaccagcctgatatacatgaaacccagtctcaaacc 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 192 gcctccattacgtaacaagttcaagaccagcctgagatacatgaaacccagtctcaaacc 251
Query: 61 aaagattgctcactagatttatgacatacgcctggacattactacttagaaggtggttcc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 252 aaagattgctcactagatttatgacatacgcctgaacattactacttagaaggtggttcc 311
Query: 121 ctatagagtcttcacatttcttacataaaacatgacagaactccta-cctgaaatagctt 179
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 312 ctatagagtcttcacatttcttacataaaacatgacagaactcctaccctgaaatagctt 371
Query: 180 tcaaagtgttggtgatattctttagaaatatcctcaagaataacagagtatcattttagg 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 372 tcaaagtgttggtgatattctttagaaatatcctcaagaatgacagagtatcattttagg 431
Query: 240 catatgggtttacactataacaaattaactaaacaccatccaacctgtggtgtgctaggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catatgggtttacactataacaaattaactaaacaccatccaacctgtggtgtgctaggt 491
Query: 300 caaagagttgtcactattcttgcttaagaagattagttatgaggtagagagcttggctta 359
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caaagagtcgtcactgttcttgcttaagaagattagttatgaggtagagagcttggctta 551
Query: 360 aaaaaa--------aaaacaatttggaaattccctctggaagcattctgagaggtagggg 411
|||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 552 aaaaaaagaaaaacaaaacaatttggaaattccctctggaagcattctgagaggcggggg 611
Query: 412 cttgggggattttgaacagggacagcatctttattctatgtgtgaaacgactctgagctg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cttgggggattttgaacagggacagcatctttattctatgtgtgaaacgactctgagctg 671
Query: 472 atgttctcctggccataaaagtgtagctgcctgtttttaaagtttcattactttgcaggc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 672 atgttctcctggccataaaagtgtagctgcctgtttttaaagtttcattactttgtaggc 731
Query: 532 acaccttatattttgatttgaaatgcacagacaatttatccatgtgctaaagtaaatggt 591
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ataccttatattttgatttgaaatgcacagacaatttatccatgtgctaaagtaaatggt 791
Query: 592 tagcaaattttcccatttatcaccttagtgtccctggaagattttaaaccaaaaggatgg 651
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 792 tagcaaattttcccatttatcaccttagtgtacctggaagattttaaaccaaaaggatgg 851
Query: 652 tatcataatgttttttctcttccttcccaccccccccactttacagcaggaaatgtaata 711
||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||
Sbjct: 852 tatcataatgttttttcccttcctcccc-ccccccccactttaaagcaggaaatgtaata 910
Query: 712 taatgagctgcatagatttaat 733
||||||||||||||||||||||
Sbjct: 911 taatgagctgcatagatttaat 932
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1132
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1122
Effective search space: 811206
Effective search space used: 811206
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
