BAC Information

Click to search

BAC

Clone NameMSMg01-111L14
Chromosome5 (Build37)
Map Location 73,447,481 - 73,447,745
singlet/doubletsinglet
Overlap geneFryl
Upstream geneGabrb1, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127
Downstream geneOciad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111L14.T7 (MSMg01no111_l14.b1)MSMg01-111L14.TJ (MSMg01no111_l14.g1)
ACCAG324323AG324324
length1,1421,147
length of high quality
(start - end)
656 (77 - 732)268 (132 - 399)
definitionCHROMAT_FILE: MSMg01no111_l14.b1 PHD_FILE: MSMg01no111_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:24 2005CHROMAT_FILE: MSMg01no111_l14.g1 PHD_FILE: MSMg01no111_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAGCAGTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCT
GTACGATTCAAATCCGTTAATATTGAAAAAGAAAGAAAGAAAACAAAAAG
ACTATAATGTTCTTCCTATATATCACCGGTTCTCAACCTTCCTAATGCTA
TGGCCCTTTAATACAGTTCCTCATGTTGGAATTTTTTTTTTATATCCCCA
GATATAAAATTATTTTCATTCCTACTTCATAACTAGTTTTGCCTCTTTTG
TGGATCATAAATAAATATCTTTGTTTTCTGATGGTCTTAGGTGACCCCTG
TGAAAGGGTCCTTCAACAGTTCAACATCCCCCCAAAGGGTTGCAGCCCAC
AGATTGAGACCCACTGATGGAGACTCTAATGACAGTGTTTACTCTACACA
GCACTGATCCTAAGCGCGTGTTCAGAATCAGCGTCGATATTAAAACAACC
ATAGAAACCTGAGGAAAGTCAGTAATCCCTACCTTGGAAAAGGGTCTGTG
GCCATCACCCACTGCAACCAGCTAACTCTTACTTAAAACCAGTGCTGTGG
GATACTTAAATCACCAGTTCTATAAAGCAAATGATCTGAAGATTGTTGAT
CCATCCTTATCTGGCCGGAGGAATCAAAGGTAGTAAAATTAAAATAACAA
ATGTAGAGAACATTCAGAGGATGGGCTCTTTAACTACAGGAAGGCAAGAG
TGGTGGCTCTGATCTTCAATCCAGCCCAGCATTTCGAGGCAGAGTTGGGT
AGATCTCTATGAAGCCAGCCAATGTGACACAGTCGCAGCAAACAAATCAA
AAGACTAAAGAGATATTCCCAAGCCCTCATCACCTGTTTGAGGTGGCCAG
GATGATAGCAAATTTCAGGTCTTCCACTGCCTTCTGTAAAAGGAAAACAT
AATTGGCCTCCTGAAGAAATGTGCCATCTTCACACGGGCCCTATCTAGCC
TCTGTTTTGTTTCTGCTCATGGCTTGGAACTTGCCAACTAGTCTAGGTTG
GGTGTCTGTCTTGCCCGTGAACCCCCAGAAATTCCCCTGTCCTACTTTCG
CAAAATGGAAACTTTGTCCTCCCCCCCCCCTCTTTTATACTTGGGGAATA
AATACTTCCCCATGGTTTCCTCGGGACTCTTGTAACACTCAA
CATTTCTTNNNNAACGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAATAATAAGCTCANAANGANNCNNCG
GCACAGACACTCTCCTTTTAATGTCTCTCGNAAATTATGTTGGAGGAATA
TATAAAACTAAGAAAAGCTCCCTCTGAGGGGCAGCAGCGCCTGAGAGTGG
TCATCCCATGTTGGGGCCCAGGTAATTAAGAAACAAAGTCCAGGGGCTAA
GAGATGGCTCCCCAGTTAAGAGCACATGTTGCTTGTTCTTAGGACCCCAG
TTTGATTCCCAGCACCTACATGGCAGCTCACTGCTGTCTATAACTCCAGT
TCCAGGGGACCTAACACCCTCTTTTGGTTTCTATAGATGCTCTACCAATT
TTTTGTAGAGACATGTGCAGGCAAAGCCTCCATACACATGAGATAAAATA
TTTTTTTCTTCCCCACAAGTCAGAATGTGTTTTAGTATTTAATAATACAT
CTAAAACAAGTATATTTTAAAACCTTTTATCATCTATTTAATATTCAACC
TTGAAGCGAAAACGTCACCTCAAAAGTCCAAATGTATGGGATTCCTTGTC
TTTAACAGCCAGGTCTCTGCACAAGACTTTGCCAATTAATGATTTATAAA
GTACTCCCTGAGAGGAAAACAAGGTCCCCCAATGCGCCGCATCATTGGAT
CTATTGCGTGTGATAATCTAACCCTACTGGTAATAACTGAGATTTTCCTG
TGTTTTATAACTCATATGACCTTCTGTTAAAAGATCTGGCAGGAAAAATG
AATAGTTTTATAGCCATCTCACAGCAACGCCGTTCTCACAGTCGGTGGTG
TACGCTGTGGGTTTTATTCCTCTCCATGCACACTCGTAACGCTTGAGTTG
ATTCCTTCTGAATCCCGAGCCCGTACTGGAAGGAAGCCCTCAACATCCTG
AAGCTCGTGGTGTCCCGTTCTGCAAGTCTCGTCGTCCCCCATGACTTCCC
CAAGGCCTAAGGCATTGGATGTTATGTCTTTCCCAAATCTCCCTTTTCTA
AAATTTTTCTCAAAACGCCCCTAAAGAAACTTTCCCCGGTAAAACTTTTA
AATTTTTCCACTTGACAATCTCCCAAGGACAAAAACCTCTCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_l14.g1 MSMg01no111_l14.g1 CHROMAT_FILE:
MSMg01no111_l14.g1 PHD_FILE: MSMg01no111_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:24 2005
         (268 letters)



>mm_chr5_73447435_73448102
          Length = 668

 Score =  435 bits (225), Expect = e-126
 Identities = 257/269 (95%), Gaps = 5/269 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattatgttggaggaatatataaaactaagaaaagctccctctgaggggcagcagcgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 311 aaattatgttggaggaatatataaaactaagaaaagctccctctgaggggcagcagtgcc 252

                                                                       
Query: 61  tgagagtggtcatcccatgttggggcccaggtaattaagaaacaaagtccaggggctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgagagtggtcatcccatgttggggcccaggtaattaagaaacaaagtccaggggctaag 192

                                                                       
Query: 121 agatggctccccagttaagagcacatgttgcttgttcttaggaccccagtttgattccca 180
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 191 agatggatccccagttaagagcacatgttgcttgttcttaggaccccagtttgagtccca 132

                                                                       
Query: 181 gcacctacatggcagctcactgctgtctataactccagttccagggga-cctaacaccct 239
              ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct: 131 ---cctacatggcagctcaccgctgtctataactccagttcc-ggggaacctaacaccct 76

                                        
Query: 240 cttttggtttctatagatgctctaccaat 268
           |||||||||||| | ||||||| ||||||
Sbjct: 75  cttttggtttctgtggatgctccaccaat 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)