Query= MSMg01no111_m11.b1 MSMg01no111_m11.b1 CHROMAT_FILE:
MSMg01no111_m11.b1 PHD_FILE: MSMg01no111_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:32 2005
(731 letters)
>mm_chr5_56393773_56394902
Length = 1130
Score = 1346 bits (696), Expect = 0.0
Identities = 720/728 (98%), Gaps = 1/728 (0%)
Strand = Plus / Plus
Query: 1 taaaacagccctataagataaatgattctctttccttttactctgattcagaacattaga 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 taaaacagccctataagataaatgattctttttccttttactctgattcagaacattaga 260
Query: 61 aacacaaatgaggggattaaagttaatgagctcaaaattccagagtgaggaaaggttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacaaatgaggggattaaagttaatgagctcaaaattccagagtgaggaaaggttggt 320
Query: 121 agtgaatgaatccaggaagctgtgatctagtcacttcttggacttgttaagattaacaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgaatgaatccaggaagctgtgatctagtcacttcttggacttgttaagattaacaac 380
Query: 181 aggataacagaaaagagcctgtatcaacctactcctgtatacaagaggaatagaatactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggataacagaaaagagcctgtatcaacctactcctgtatacaagaggaatagaatactt 440
Query: 241 gatgttccccaaagtcttgccataagcatcaaaagaagaaaaatctcataataaaaatat 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgttccccaaagtcttggcataagcatcaaaagaagaaaaatctcataataaaaatat 500
Query: 301 tttactgaaatattttgtggttttaaacctctgtttcctataccatgcaatagttaataa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttactgaaatattttgtggctttaaacctctgtttcctataccatgcaatagttaataa 560
Query: 361 tatttatcaaaattgtgaaacaccagcaaaaactgaatacagacctgagataacagtgaa 420
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 561 tatttatcaaaattgtgaaacaccagcaaaagctaaatacagacctgagataacagtgaa 620
Query: 421 acacttgaaagaatcacacagtgtgtgcatgtgtctatttgtgcatacacatttgtgagt 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 acacttgaaagaatcacacagtgtgtgcatgtgtctgtttgtgcatacacatttgtgagt 680
Query: 481 acatgctgaagtgtatgtatggatgttggtatatgtctacttgcatgtaggataacagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatgctgaagtgtatgtatggatgttggtatatgtctacttgcatgtaggataacagtt 740
Query: 541 gatgctagatatcttctaactctttccactgtagactcttaatggtatctctctgaactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgctagatatcttctaactctttccactgtagactcttaatggtatctctctgaactt 800
Query: 601 agtactcaacaattttagctaggatttctgttcatttagcacaagagttttcagttctct 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 agtactcaacaattttagctaggatttctgttcatttagcacaagagttt-cagttctct 859
Query: 661 ctgattctacttgatttcagcaatggattcatgcgtgagcaccactttccttgtctttat 720
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 860 ctgattctacttgatttcagcaatggattcatacgtgagcaccactttccttgtctttat 919
Query: 721 gaaatgtt 728
||||||||
Sbjct: 920 gaaatgtt 927
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1130
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1120
Effective search space: 807520
Effective search space used: 807520
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_m11.g1 MSMg01no111_m11.g1 CHROMAT_FILE:
MSMg01no111_m11.g1 PHD_FILE: MSMg01no111_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:32 2005
(712 letters)
>mm_chr5_56575270_56576381
Length = 1112
Score = 1338 bits (692), Expect = 0.0
Identities = 707/712 (99%)
Strand = Plus / Minus
Query: 1 cctgacactctccaagaaatcctctctctatacctgaactttcaccttcctacttctttc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 912 cctgacactctccaagaaatcctctctctataccagaactttcaccttcctacttctttc 853
Query: 61 ctatgctcatagatcaagagcattttattgacaagtgaagttttcaaacattgcacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctatgctcatagatcaagagcattttattgacaagtgaagttttcaaacattgcacaaaa 793
Query: 121 gattccctctacacatctggcagagagaaaaagtagtacactggacatgcccaggaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gattccctctacacatctggcagagagaaaaagtagtacactggacatgcccaggaccag 733
Query: 181 ggagtcaagagaaaacaatgaagatagaagaaatagaaaatataatgatagggaatagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggagtcaagagaaaacaatgaagatagaagaaatagaaaatataatgatagggaatagat 673
Query: 241 attgagtataacaagtgaagaatggaatcatgggttatcaggaggatgagtagttagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 attgagtataacaagtgaagaatggaatcatgggttatcaggaggatgagtagttagaag 613
Query: 301 ggaagtccataaacaaaaacaggccttggagaatggggtggatgtgtagagacatgagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaagtccataaacaaaaacaggccttggagaatggggtggatgtgtagagacatgagat 553
Query: 361 gcatacgaagtacttgtgagtagggactgaggaatcctgaagcctgcatgggatttgata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcatacgaagtacttgtgagtagggactgaggaatcctgaagcctgcatgggatttgata 493
Query: 421 tacaaccagaggtgcatgtctgtggaggaccatacgaccctcctgccagagaaaagggat 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 492 tacaaccagaggtgcatgtctgtggaggaccatatgaccctcctgccagagaaaagggat 433
Query: 481 atagattctattgcacatggataatccatttcaaaagttgtgcagaaatgtcttttatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 432 atagattctattgcacatggataatccatttcaaaagttgtgcagaaatgttttttatcc 373
Query: 541 aaccacaagaaaattgtctgttgtctagcttgaactcatttctaggcatattgactagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaccacaagaaaattgtctgttgtctagcttgaactcatttctaggcatattgactagct 313
Query: 601 gacagcaagcagtagcttttgagaacctcactgcagggcatttctgctatgatatactct 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gagagcaagcagtagcttttgagaacctcactgcagggcatttctgctatgatatactct 253
Query: 661 gcttagcatcaatgcctttttccccctcaagcaaaggtacacgatttcatga 712
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 252 gcttagcatcaatgcctttttccccctcaagcaaaggtacaagatttcatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
