BAC Information

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BAC

Clone NameMSMg01-111M18
Chromosome5 (Build37)
Map Location 139,169,613 - 139,170,112
singlet/doubletsinglet
Overlap genenone
Upstream gene6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
Downstream geneBC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111M18.T7 (MSMg01no111_m18.b1)MSMg01-111M18.TJ (MSMg01no111_m18.g1)
ACCAG324377AG324378
length1,2081,178
length of high quality
(start - end)
502 (107 - 608)616 (86 - 701)
definitionCHROMAT_FILE: MSMg01no111_m18.b1 PHD_FILE: MSMg01no111_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:34 2005CHROMAT_FILE: MSMg01no111_m18.g1 PHD_FILE: MSMg01no111_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGCT
CCTCAGCACCTTTAATGCCTGGATGTTGCCATGCTTCCCACTATGATGAC
CTTGAACTAAACTTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTTTCC
TTTATAAAGCTTGCCTTGGCCATGGCGTCTCTTCACAGCATTGGAAACCC
TAAGACAGTCTTTATGTTATTTTCCAATCAAAGCTATTTGGGAGTCAGTA
AGAGGAAAGTGATTTCTGCACAACGTCTCAATTCCACATCATTGATTGAA
TCAATCTCTACTAATTGCCGTCAATACTCTCATCAACTGGAGGAGCCCGT
GAGACTACTGTGGCCTGTGTTTTTTCACTGATGTCACTGATGAGTCTCAC
AGTGGTATCTCTTTGTCACATGACAGCCTCATGCTATGTTCATGTCTGAC
AAGGGACAACTCCCCTTGTTATTCTCCAAAACAGCTTGTGTGGCCCTTTG
AACCTTTAAACCCTGACAGAGCTCACCCACTCCCTGCTGCATCTCCACCT
AGTCTGGGGACATCATTCTTTCCTCTGGAGGGTGTGAGGGTGTGACTGTC
TCCAAACAAAGGCTCAGCTTTTCCTTCAGGTAGGTTGGGGGGAGGTAGTT
CATTCCTGTGCTGTTGCTATATCTATTCTTGCCTTTATTCTTTGTCTCTA
TGCCTTGTGTAATACTCTAAAATCTCTTTTCAGTGTTAGCTTATAAATTA
ACTATTTCTGTCTATCTATATGCAATTATCTGCTTGTTACTCCTGTTCTT
GTCTGTTCCAATAATAATTATTGTTACTCCTATTCTTTATTTGCCCTTCC
ATTGTTGATATGTATTTGTTAAAAATTCCATTTCTTTTTTCTTCCAACTT
GAATTATGGAAACTTTGTTTGTATACTTCTTTCTTTCATTTCTAATCCCT
TTACCTATTTCCCTTTTTTTTCTCTTTTTTTACTTTGCTTATTCTCTGCA
TATTCCTGTAATAACTTTTGTTTTTTCTATTACTTTTAATTGTTTTCCCC
TCATAAAATCACTCCCCATACTTTATGTTTCCCAACTTTTATCTTTTTCT
GTCTCTCTTGTTTTATCATATTTTCTAATATTTTCTACTTCTTCCCTGAT
TTTATCCTAAATAACACTCTCCCTTCATTTATATCTATCGTCCTACTTTC
TACTATTA
TTTTTCTCCGCTATGGAGCTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTCTTAAGGGCCTGTGGGCCTCTCATCCC
AGCCAAATCAGCCTGTTCCAGGCTTAAGGAGAGAGGTTATCTCAAAATTA
AGGTACAGAGCATTTGAGGAAGACATCTGTGATCCTTTCTATATTCTTGG
ACCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTGTTGGAATAGGTGTGA
CCTGATAGGAGTAGGTGTGTCACTGTGGATGTGGGCTTAATACTCTCACC
CTAGGTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTGGGATGAAGACAT
AGAACTCTCAGCTCTGCCTGGATACGGCCATGCTCTCATCTTGATGATAA
TGGACTGAAGCTCTGAGCCTGTAAGCCAGCCCCAATTAAATGTTGTTTTT
TATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAA
CTAATACAACATCCAATGTTGACCTCTGGCCTCCATATGTGTGTGCACAG
GTGAGTACACCCAAGTACACACACCTACACACGCACACGCGCGCACGCAT
GCACAGAAACACACACCCCAGTTTGAAGATAGATTATTTGAAAAGTCCAT
CACTAGGCCAGGCATAGTGGCACTCACTTGTAACCCTAACACTCATGTAT
CTGAGGCAGGAGGATTGCAATGCCAAGGTAACCTGGGCTACAGAACAAGA
TTTGTCTTTAACTAAGACAAAACCCCACATGAGACTTCTTATGTGAAGAG
GCTAAGGCCCAGCATGAATGCTTTCACATGTGCAGGGAAGGTGAGGACCG
TGGTCATTGCTCACATTGGCAGCCCCGGTGTGGTCTCTGCAGTGGGGGAA
CATTACCCTGAAGGGCAAGGCTTCACCCCTTTCCCTTCTTGCCCCATCAG
GTTGCCTAACTTCCAAGCTCCAGTTGCCCAATGGTGTTACAATGTAATTT
CTCCCCTTGCTTGCCCCAGGTCCCCTGTACCTGTATTGGTAAATATTCTA
CAAACAAACCTTTTTTCCCTTCCCCACGGTGGTCCATTTCCCTCCCTTTC
CCAAAATGAAAAACTGTCCTATTTGTTTTCGCCCTCCTTTTTCTCTGGCC
ATTTAAATCTTATTTTTACTCCAATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_m18.b1 MSMg01no111_m18.b1 CHROMAT_FILE:
MSMg01no111_m18.b1 PHD_FILE: MSMg01no111_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:34 2005
         (502 letters)



>mm_chr5_139169413_139170312
          Length = 900

 Score =  913 bits (472), Expect = 0.0
 Identities = 494/502 (98%), Gaps = 2/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaacttctgaacctgtaagccagccccaattaaatgttttcctttataaagcttgcct 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctaaacttctgaaactgtaagccagccccaattaaatgttttcctttataaaacttgcct 260

                                                                       
Query: 61  tggccatggcgtctcttcacagcattggaaaccctaagacagtctttatgttattttcca 120
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctatggtgtctcttcacagcattggaaaccctaagacagtctttatgttattttcca 320

                                                                       
Query: 121 atcaaagctatttgggagtcagtaagaggaaagtgatttctgcacaacgtctcaattcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaaagctatttgggagtcagtaagaggaaagtgatttctgcacaacgtctcaattcca 380

                                                                       
Query: 181 catcattgattgaatcaatctctactaattgccgtcaatactctcatcaactggaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcattgattgaatcaatctctactaattgccgtcaatactctcatcaactggaggagc 440

                                                                       
Query: 241 ccgtgagactactgtggcctgtgttttttcactgatgtcactgatgagtctcacagtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgtgagactactgtggcctgtgttttttcactgatgtcactgatgagtctcacagtggt 500

                                                                       
Query: 301 atctctttgtcacatgacagcctcatgctatgttcatgtctgacaagggacaactcccct 360
           ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 atctct--gtcacatgacagcctcatgctatgttcatgtctgagaagggacaactcccct 558

                                                                       
Query: 361 tgttattctccaaaacagcttgtgtggccctttgaacctttaaaccctgacagagctcac 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 559 tgttattctccaaaacagcttgtgtggcccgttgaacctttaaaccctgacagagctcac 618

                                                                       
Query: 421 ccactccctgctgcatctccacctagtctggggacatcattctttcctctggagggtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccactccctgctgcatctccacctagtctggggacatcattctttcctctggagggtgtg 678

                                 
Query: 481 agggtgtgactgtctccaaaca 502
           ||||||||||||||||||||||
Sbjct: 679 agggtgtgactgtctccaaaca 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 900
Length adjustment: 10
Effective length of query: 492
Effective length of database: 890
Effective search space:   437880
Effective search space used:   437880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)