BAC Information

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BAC

Clone NameMSMg01-111N11
Chromosome5 (Build37)
Map Location 27,126,810 - 27,127,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b, Paxip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111N11.T7 (MSMg01no111_n11.b1)MSMg01-111N11.TJ (MSMg01no111_n11.g1)
ACCAG324408AG324409
length1,1071,246
length of high quality
(start - end)
271 (54 - 324)230 (118 - 347)
definitionCHROMAT_FILE: MSMg01no111_n11.b1 PHD_FILE: MSMg01no111_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:40 2005CHROMAT_FILE: MSMg01no111_n11.g1 PHD_FILE: MSMg01no111_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAAAGACCCCCGATGGACTGGGATACTAGAAACATTCCCTTTTAAATTCT
CCAAGAAGAAAGAATGTCTCTGTTGCCCTAAGGAACTTCCACCTAGCCCC
AGTCAGCATTAATCCTGCTGTCTCTGGCATGATCATGCAATGGTCTACAG
CATGTGACAATATCCAAGTTCACCTGCTCACAGCTTGTCAACCACATCAC
AGACTTGGGAGGGACCCATATGGCTCTACTCCTCTGGCTGGTCTACTGAT
ACGCTACTGATGGGTCTTGGGGTAGGACCAGCCATTGTCTTCCGTTATTT
ACCTGCTTCTGAATCCACCAGACTCCTTTGTATAGTTACAATCCTGTGGG
CACCAACAGCCCTGGCTAAAGTCATTGAATCACACACCACAACAAACAGG
CATGGATGTGGCGGAATTGTTATGCAAAAAGGAAACTCAGCCAGGCTGGT
ACTGGCGGATGAGAGTGATAGAGAGGCTGATAGTAATAAGAATTCATTAC
AAATATTGTATAAAAATTCTCAACAAATTTAATTAATACATAAAATGATG
AATCTAAATATATATCTAATCTTGGAACACTGCAAACAGTGGTTTAATAT
ATTTTCTGAATAGTTTGAAATTAATAAAGGTCATATAATTACAAAGCATA
AGTTTGTTTTCTGCTGACCTGAATCAAAAATCTGGATCTGGTTGGTGGTA
TGATTGCTCCATCTTGGATAATTCATGCATGTCTGCCTAACTTCTCATTT
AAATGTTTATTTAATTAGCAAATTGATAGTTCATATTACTTCATAAATCA
CTTTTCCTTTATGTATCTTAATTTTATTTTATGCCATTGGTTTACTTACT
CAAACCCTTCTTCCTCTAAAATATTCAAACGAAGCCCCCTCCCTTTTTTT
TTTGCCCATTTAAATAATTGTTTCCACCAAAAAACTTGTCCATATCTTTT
TTTCTTTTGCCGTAAATGAATAAAAGTTTTCGACACAAATCTACTCTAGG
GTTGGAAAGGCTTTAACTCCGGCATTTGTATCTCTGTTAAACTTCCCCTC
CATTTTTCTAAATCCAAGGTCTTCTGTTAGCTTTTAATCTCTTTACTTCT
ATTCCCG
NCACATCGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTTTAAAATCCTAAGTGCATAGCCCAGAGAAATGGATC
CATCTTTTAACAACTCTCACACACAAATCTGTTGCGGATTTGGTCTAATG
CTTGTATTGTGTTAATTGTGTCCCCAAAATTGCAAGAGAATTGTTCCCAT
CCCCAGCTGGTTTTGATTGGTAAATAAAGTTTCCAGTGGCCAATGGCTGG
TTAGGGAGACAAAGGCAGGACTTTAGGATTCCTGGGCAAAGGGACCAAAG
CAGGAAGAAGGAGACAGAGTCACCAAGCCAGAAAAGGAGTAAAGCCCAGG
CCTGAGAGGTGCATAAGAGAGAGCATAGCAATCCTGTAATATTTTTGATG
GACCATCTAGAGACTGCCATACACGGGGATCCATCCCATAATCATTTTTC
AAACACTGACACCATTGCATACACTAGCAAGATTTTGTTGAAAGGACCCT
TGTGCTGTCGCTTGTGAGACTATGCTGGGGCCTATCAAACACAGAAGTGG
ATGCTCACAGTCAGCTTATTGGATGGATCACAGGGTCTCCAATGGAGGAG
CTATAGAAAGTACCCAAGGATCTGTTGTGATCTGCAACCCTATAGGTGGA
ACAACAATATGAACTATCCATTACCCCCCGGAGCTCGTGTCTCTAGTTGC
ATATGTATCTTAAGATATCTCTATTTGTTCCTCATTGCAAAGAGAGGCCC
CTTGGTTGTGTTAATTTTATTATGCTTTATTACAGTTGTATGCTCCTGTT
CTAATAATTGTAAATTGTTTGCTTGCTTTCATTGTTCCTTTTTTTTTTTT
TACTTTCTCTTCCCTTTCTTCTCTTTCTTTTTTTTTTATCTTTTTCTCTT
TTTTTTTTTCCTTTCTTTTTTTCTTTTTTTCTTTTTCTATCTTCTTTTTT
TAATTGTCTTTTCTTTTCTTTTTCTTTTTCTCTTTTTATTATTTTTTCTT
TTCAATTATACTTATCCTTTTCCTCTACTTTCATTCTCTCTTCTTTTGGT
TATTTTTTTCTTCTTTTTATCTACTTTTTTCTTTTTTTCTTTTGTCTTTC
CTAGTTTCTCTTTCTTTCTCTTCTTTACTCTCTTCTTTTTTATTTNTCTT
TCTCTTCTTCTTATTTTCTTTTTNTCTTTACTATTATTATGTTTCTATCT
TATACTATTTATGTCATCATCTCTTCTTCNCTTTAATCTTCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_n11.b1 MSMg01no111_n11.b1 CHROMAT_FILE:
MSMg01no111_n11.b1 PHD_FILE: MSMg01no111_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:40 2005
         (271 letters)



>mm_chr5_27126610_27127280
          Length = 671

 Score =  485 bits (251), Expect = e-142
 Identities = 266/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagaaagaatgtctctgttgccctaaggaacttccacctagccccagtcagcattaat 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagaaagaatgtctctgttgcccgaaggaacttccacctagccccagtcagcattaat 260

                                                                       
Query: 61  cctgctgtctctggcatgatcatgcaatggtctacagcatgtgacaatatccaagttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cctgctgtctctggcatgatcatgcaatggtctacagcatgtgacaacatccaagttcac 320

                                                                       
Query: 121 ctgctcacagcttgtcaaccacatcacagacttgggagggacccatatggctctactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctcacagcttgtcaaccacatcacagacttgggagggacccatatggctctactcct 380

                                                                       
Query: 181 ctggctggtctactgatacgctactgatgggtcttggggtaggaccagccattgtcttcc 240
           ||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 381 ctggctggtctactgatacgctactgatgggtcctggggtagggccagtcattgtcttcc 440

                                          
Query: 241 gttatttacctgcttctgaatccaccagact 271
           |||||||||||||||||||||||||||||||
Sbjct: 441 gttatttacctgcttctgaatccaccagact 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)