BAC Information

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BAC

Clone NameMSMg01-112A01
Chromosome5 (Build37)
Map Location 50,631,277 - 50,631,597
singlet/doubletsinglet
Overlap geneEG637307
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112A01.T7 (MSMg01no112_a01.b1)MSMg01-112A01.TJ (MSMg01no112_a01.g1)
ACCAG324529AG324530
length711694
length of high quality
(start - end)
325 (38 - 362)293 (58 - 350)
definitionCHROMAT_FILE: MSMg01no112_a01.b1 PHD_FILE: MSMg01no112_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:02 2005CHROMAT_FILE: MSMg01no112_a01.g1 PHD_FILE: MSMg01no112_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGGATCCGCGGAATTCAGC
TGCCATGTCCACCAGGCTGGCCTCGAACTCACAGAACTTTGCCTGTTTCA
ACCTCTCACCTGCTGGCATGAAAGGTGTGCACCACTATGTTGGGCTATAT
TTAATTTCTAACAAAAGGCTTGACATCATACACTTATTCCTTTAAGTTAA
CCATAACTGTATAATCACTCTCTAGAAAGAAAAAAAATTGATATGACAAA
AGTGCAAACGCTTATTGTAAACAGACGGAGTGGGAACTGGGAAGATTGCT
CAGTGGTTAATGTGCCTGCCATGAGGATGTGAATTCATATCCCTAGCACT
CAGACAGAAATGAGAGCCATAGTGAGTTCAGATCCCGGGGGCTCACTGGT
CACCCAGTACAGCTGAAATGGGGAGTTCCAGATTCAGTGACAGACCTTAT
TTTATAAAAGCAGGCCGCAAAGCAGGTCAGGATGACACCTGATGTCATCC
AAAATTGCCTGCAAGGGGGGGCACACAACTGCACATATTTAACTGTGTGT
ACACCCTTCCTCCACCCACACATTGGGGGATTCTATATGCTAGTATTTTT
AAAACATATGAAAACGCCTGACTTATTGCCATCCACTTCTTCCCCTCTCT
ACCGGCACACGGAAACCTAAAAGCCCAATATTTGCCCCTTTTTTTTTCCC
CCATCGCACCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATAACAACAAAAACACAGAGAGCTCACATACTCACAGAAACT
AAATAATACTTTACTCATTGATAATGTGGTCAGGAAAAAATGAAAGAGAT
TAAAGACTTCTAGAATTTAATGAAAATGAAGCCACAGTATGCCCAAACTT
ATGGGACACAATGAAATCAGTGCTTAGAAGAAAATTCATAACACTGAGTA
CCATCATAAAGAAATTAGAAAGACCATACACTAGCAACTTAGCAGCACAT
CTGAAATCTCTAGAACAAAGAGAAGAAAACACACCCAAGAGGAGTACATG
GCACGACATGGGCAAACTCAGGGTTAAAATCAACCAATTAGAAACAGAGA
ACTATACAAAGAGCTAACAAAGCTAAGAGCTGGTTCTTTAAGAAAAGCAA
CAAGATAAATAAACCCTTAGCCAAACTAACTAAAGGGTACAGAGACTGTA
TCCAAATTAACAAAATCAAAAATGAAAAGGGAAACATAACAGAAACTGAA
GAAATTCATGAAACCATCAGATCCTACTACAAAAGCCTATATTCAACCGT
ATCCAAACACAATTGCATGACCTAATACAGCAATTTAAGATGCTGATCAC
GACATGCAGAGATGGCTCACACGTTAATACCGCTGACTGCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_a01.b1 MSMg01no112_a01.b1 CHROMAT_FILE:
MSMg01no112_a01.b1 PHD_FILE: MSMg01no112_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:02 2005
         (325 letters)



>mm_chr5_50631073_50631797
          Length = 725

 Score =  590 bits (305), Expect = e-173
 Identities = 317/321 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagctgccatgtccaccaggctggcctcgaactcacagaactttgcctgtttcaa 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctgccatgtttaccaggctggcctcgaactcacagaactttgcctgtttcaa 264

                                                                       
Query: 65  cctctcacctgctggcatgaaaggtgtgcaccactatgttgggctatatttaatttctaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 cctctcacctgctggcatgaaaggtgtgcaccactatgttgggctatatttaatttctta 324

                                                                       
Query: 125 caaaaggcttgacatcatacacttattcctttaagttaaccataactgtataatcactct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaggcttgacatcatacacttattcctttaagttaaccataactgtataatcactct 384

                                                                       
Query: 185 ctagaaagaaaaaaaattgatatgacaaaagtgcaaacgcttattgtaaacagacggagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagaaagaaaaaaaattgatatgacaaaagtgcaaacgcttattgtaaacagacggagt 444

                                                                       
Query: 245 gggaactgggaagattgctcagtggttaatgtgcctgccatgaggatgtgaattcatatc 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 gggaactgggaagattgctcagtgggtaatgtgcctgccatgaggatgtgaattcatatc 504

                                
Query: 305 cctagcactcagacagaaatg 325
           |||||||||||||||||||||
Sbjct: 505 cctagcactcagacagaaatg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)