BAC Information

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BAC

Clone NameMSMg01-112B15
Chromosome5 (Build37)
Map Location 114,232,467 - 114,232,781
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu
Downstream geneTmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112B15.T7 (MSMg01no112_b15.b1)MSMg01-112B15.TJ (MSMg01no112_b15.g1)
ACCAG324603AG324604
length810783
length of high quality
(start - end)
320 (46 - 365)---
definitionCHROMAT_FILE: MSMg01no112_b15.b1 PHD_FILE: MSMg01no112_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:09 2005CHROMAT_FILE: MSMg01no112_b15.g1 PHD_FILE: MSMg01no112_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGGGGTACCAGAGGGCACCAGTGTGAGGGGGTGGAGGGACTGT
TGGGGACATAGGTCCTGATGCAGGACAGCATGAGGAAAGTCAGGCCTAGA
GCACCCGGCCAGGGGGACTGAGGCCTTGGGTGGGCTACCCCATGCCTGTC
TCTCCTCTCTGCCTGGTTCTGCATTCTTACTCCACTGCCCCAGGTGTGGG
CAGAGCCCATGAGTAGCCTCAAGTGAATGCCGGCTTGTGGCATCCACTGG
AGAGTCTCTTTCTGGGGAAAATGGGTCTGTAATAATGGTGGTGATGGGGA
TGATGATGGTGATGTTGATGGCCCCCCCCCTTTCTTTTCCCTTTTTCCCT
CCTTCCCTTTTTTCTTCCCCCCCCCCGCCGTCGTCATTTTTTCCCTTCCC
GTTTCCCTCCCTCCTCTTCCTCTTTTCTCTTCCTTTCCCTCCTTTCTCCC
CCCCTCCCTTTCCTTTTTGTCCCCTATCCCACTTTTTCTCCCCTCCTTCC
CCCTTTTTCTCTTTTCCCCTCCTCCTTTTCCTCCTTTTCGTCTTCCTCTT
TCTCTATTCCCCCTTCCCCCTTTTTTTCTCCTCCCTTCTTTCTCCTATTT
TTTTGTTCTCTTTTCCGATTCCCCCTTCCTTTCTCTTCCCCCATCTTTTC
TTTACACCTTCCCTTTCCTCCTCTCCCTTCTCTCTTCTTTTTTATCTCCC
CCCCCCTCCCCTCTCTCTTTCTCTCTTTTCTTTTCTATCATTTTTTTCTC
CCCTTTTCCT
TTTTTTCACGGTTTTTTATTCCACCACCGGAACCCCCCCCCCACNNNNCC
CCCATGACAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGGCCGGGGG
NAACNANAGAAGGATTGCANGACGNAAGAACCAAAGGCAGGGAAGAAACC
CCGGGCCCCGAAGGANGNAANCCCCCCCACAAGGNNNANANGGGCAAGNG
NACACACACAGCGGCCGACACCCNCGGAGACCAGAGGNGNCGGAACNCCC
GAGGNCGGAGCNCCCCGCAACCGGGAGCCAGGAACCGAACGCAGGCCCGG
CGGAAGAGCCCAGNCCCCCCCCCAGCCCCAGCCCACNGGCCCGCNCGCCC
GACNAACNGACCGACCCCCTTTTTTTTTTTGNGACAAGCGGCACNCGGNA
CAACACCGACCGTGATGCCCGCCTACCCTACAGGCTACTTTAAAAACTTA
TTTTTACTACCATTTTACGCGAGTGGGTTTCGAGGGGAGCGTTACGTTTG
CGATGTCACAGAGGAGGTGGCTCTGCAGGACGAGAGAGCCCCACAGGCGG
TTCTGTTATGGAAGAAGCCCGAACTACACGGCCCCAGGAATTTAAAAATA
ACCCAGTCAAGGGATTGCCTGTTCCCGGCGTCGCTTGCGATTTTGTTAAA
GAGAGGCCATTTATAGCACCCCAGGCGCATTGATGAAGATCTCTGACGCG
TCCCGTGTTTTTTTTTTTCCTGTTGGTTTCAGNACCAGGGGGTAACATTG
AACCTTTTAGTTATTCCCCCCGATACTTTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_b15.b1 MSMg01no112_b15.b1 CHROMAT_FILE:
MSMg01no112_b15.b1 PHD_FILE: MSMg01no112_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:09 2005
         (320 letters)



>mm_chr5_114232296_114233015
          Length = 720

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccggggtaccagagggcaccagtgtgagggggtggagggactgttggggacat 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattctccggggaaggagagggcaccagtgtgagggggtggagggactgttggggacat 427

                                                                       
Query: 65  aggtcctgatgcaggacagcatgaggaaagtcaggcctagagcacccggccagggggact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aggtcctgatgcaggacagcatgaggaaagtcaggcctagagcacccggccagggggact 367

                                                                       
Query: 125 gaggccttgggtgggctaccccatgcctgtctctcctctctgcctggttctgcattctta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaggccttgggtgggctaccccatgcctgtctctcctctctgcctggttctgcattctta 307

                                                                       
Query: 185 ctccactgccccaggtgtgggcagagcccatgagtagcctcaagtgaatgccggcttgtg 244
           ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 306 ctccactgctccaggtgtgggcagagcccaggagtagcctcaagtgaacgccggcttgtg 247

                                                                       
Query: 245 gcatccactggagagtctctttctggggaaaatgggtctgtaataatggtggtgatgggg 304
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 246 gcatccactggagagtctctttctggggaaaatgggtctgtattaatggtggcgatgggg 187

                          
Query: 305 atgatgatggtgatg 319
           |||||||||||||||
Sbjct: 186 atgatgatggtgatg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)