BAC Information

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BAC

Clone NameMSMg01-112K05
Chromosome5 (Build37)
Map Location 146,005,327 - 146,005,493
singlet/doubletsinglet
Overlap geneZfp655
Upstream geneBri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116
Downstream geneLOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K05.T7 (MSMg01no112_k05.b1)MSMg01-112K05.TJ (MSMg01no112_k05.g1)
ACCAG324995AG324996
length750722
length of high quality
(start - end)
250 (71 - 320)170 (76 - 245)
definitionCHROMAT_FILE: MSMg01no112_k05.b1 PHD_FILE: MSMg01no112_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005CHROMAT_FILE: MSMg01no112_k05.g1 PHD_FILE: MSMg01no112_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCCAGTTTATTTCCCCTACACAGTTAAGATTGTGAAAAAGGTATAAAA
CAATAAAATAAGCGGGATGTTGCCAATCCCAGCACTCAAGAAGGGGAGAC
AGGAAGGGTGAATGTTTTATGCTGTCCTGAGCTACAAAGTGAGTGCCAAT
CAGCCAGGGCTACCCATCAAGACAGCCTTGAAACAATGAAAATTAGTTAG
AGCTGGCAACAGTTTAGAGGCCAAACTGTTAAGAGAAGAATAAGTCATGA
GCCCAGTAAATGTGATACGGACAAGAATACTAACGGGATTACCTCCATGT
ACTGAGTTAAAGATATTGTAAGGGGCTAGCAATATGATTCAGCAGAGAGA
GTCGCCTTGTTTTGCACGTGACCACAGTTCGATTTCTGTGCTGTGCATGA
AGGTGGATAGTAAGACCCAGCTCTATACGTCTTCCTCTGGTCTCCACATG
TTGCACCGTGTTATATATTCTCACACTTGTACACTGATTGCCATTCTCAG
ACATTTTTTTTACTGATTTCTGAACCCTTCTTCCTCCCCCCTTTTCATAT
CGCTGTCTCTGTCCTCTATTTCCATGCCTCATCCATCCTTCACCTATTCT
CTCTATCGGCTTTCTTGTTCCTCCGCCTCACCTTTGTTTACTATTCCCCT
CCTCACCTTCCTTTGTATTTGCCCCTTTCTCCTATACCTTTTCACCCTCN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGATGCTGAATAAGATGGGAATT
CAATCTAAAGTCTTTCCCACATTCGCTACATGAGTAGGGTTTTTCTCGGA
AACGAATTCCTTGTTGTTTAACATAGGCCAGCCCACATTCATCATATTCA
TAGGACTTCTCTTGATGATGTAGTCTCTGATGTTCAACTAAGCATGAGGC
GTGGTAGAAGTCACTGCCACACACGGTACATTTACAGGACATGTCCTTAT
GTGTTCTCTGATGCTGAGTAAGATGCACACTTCGGCTGAAGACTCTTTCA
CAGGTTCCACACTTGTAAGACCTGGCTTTGGCATGATCCTTCTTATGTCG
AAGCACATCTGAGCTCTGGCTACCAGACTTATCAGGTGCATCTTAGGACT
TATCAGACGCTTCACATTTGTAGGATTTTTCTCTGGTGTGCATTCTCCTG
TGTCGACCAAGACCTGAGCTCTGACTGACCGATTTCTCACCTTCTTTACA
TTTGCCAGGGTTTCTCTCTTGCGTGAATTCTTTGATGCCCTAGTAAGACC
TTGAGGCCTGATGGAACGTTTTCCCCCCAGTATCCCATTTATAGCCATCT
GTCCGTGGCAGGCCTGCTCCCCCACTTATCAAGGTGCTACAGATCTTCCA
ATCTTTCCTTATCCCTTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k05.g1 MSMg01no112_k05.g1 CHROMAT_FILE:
MSMg01no112_k05.g1 PHD_FILE: MSMg01no112_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:51 2005
         (170 letters)



>mm_chr5_146005127_146005696
          Length = 570

 Score =  300 bits (155), Expect = 3e-86
 Identities = 164/167 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatgctgaataagatgggaattcaatctaaagtctttcccacattcgctacatgagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 tttgatgctgaataagatgggaattcaatctaaagtctttcccacattcgttacatgagt 308

                                                                       
Query: 61  agggtttttctcggaaacgaattccttgttgtttaacataggccagcccacattcatcat 120
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agggcttttcttggaaacgaattccttgttgtttaacataggccagcccacattcatcat 248

                                                          
Query: 121 attcataggacttctcttgatgatgtagtctctgatgttcaactaag 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attcataggacttctcttgatgatgtagtctctgatgttcaactaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)