Query= MSMg01no112_k19.b1 MSMg01no112_k19.b1 CHROMAT_FILE:
MSMg01no112_k19.b1 PHD_FILE: MSMg01no112_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:54 2005
(560 letters)
>mm_chr5_3903992_3904954
Length = 963
Score = 828 bits (428), Expect = 0.0
Identities = 530/566 (93%), Gaps = 13/566 (2%)
Strand = Plus / Plus
Query: 1 ttgattaaaacagtaaagttatccagtgagtttcaagttgttaacatcctgcaaactagc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttgattaaaacagtaaagttatccagtgagtttcaagttgttaacatcctgcaaactaac 260
Query: 61 aaaaagctagctcaatttccttccctttatgctgacctcacagtcctaacgatcttactc 120
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 261 aaaaagctagctcaatttccttccctttatgctgacctcatagtcctaaagatcttactc 320
Query: 121 caggcaacttactttctttgaagagtgcctaaccagaatctacagagactccttgagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcaacttactttctttgaagagtgcctaaccagaatctacagagactccttgagtca 380
Query: 181 gatttcctattataacaaaggcccatggcaaagaacaggatactggcttaggaaatttgc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttcctattataacaaaggcctatggcaaagaacaggatactggcttaggaaatttgc 440
Query: 241 tgcttgcagtcctgaagggatcctggattcagtgggaatgaggctgacaacataacagga 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctgcagtcctgaagggatcctggattcagtgggaatgaggctgacaacataacagga 500
Query: 301 cagaagtggccaagacaaatggaataattcctagaaatcttatacagccatgtgagtcta 360
|||||||||||||||||||| ||||||||| |||||||| || |||| ||| ||||| ||
Sbjct: 501 cagaagtggccaagacaaatagaataattcatagaaatcctagacagtcatatgagttta 560
Query: 361 aatgcctgtgagatgtttttatcttacagaa--aca-cttttaatcaatta-c-catggt 415
|| |||||| | |||||| |||||| |||| ||| |||| ||||||||| | || ||
Sbjct: 561 aacacctgtggggtgttttgatcttagagaactacatcttt-aatcaattatcaca--gt 617
Query: 416 gtaatat-caatcttggtagagaatttatctcatcagagagttggaaagcaaatactaag 474
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 618 gtaattttcaatcttggtagagaatttatctcatcagagagttggaaaacaaatactaag 677
Query: 475 aaggatggcatcttccttgctcaaaagtgtctacattatgttcttaaattctac--ctgt 532
||||||||||||||||||| |||||||||||||||||||||| ||||| | ||| ||||
Sbjct: 678 aaggatggcatcttccttgttcaaaagtgtctacattatgtt-ttaaaat-tacatctgt 735
Query: 533 aaagacttattcctcattattatagc 558
|||||||||||||||||| |||||||
Sbjct: 736 aaagacttattcctcatttttatagc 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 963
Length adjustment: 10
Effective length of query: 550
Effective length of database: 953
Effective search space: 524150
Effective search space used: 524150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_k19.g1 MSMg01no112_k19.g1 CHROMAT_FILE:
MSMg01no112_k19.g1 PHD_FILE: MSMg01no112_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:54 2005
(464 letters)
>mm_chr5_4110163_4111026
Length = 864
Score = 600 bits (310), Expect = e-176
Identities = 316/318 (99%)
Strand = Plus / Plus
Query: 1 ctatttctggggttaatactgcatgggtggtggaacagaagtctaatcctgcacttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttctggggttaatactgcatgggtggtggaacagaagtctaatcctgcacttcctg 260
Query: 61 ggattgccctgataagttaaaaaatggatttccttggcctggcagcagcttcatgaccct 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ggattgccctgataagttaaaaaatggatttcgttggcctggcagcagcttcatgaccct 320
Query: 121 ataagctgcttgctgtgggcatctgggggcctgaggctggcccctcttcttgtttcctgg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ataagctgcttgctgtgggcatctgggggcctgagactggcccctcttcttgtttcctgg 380
Query: 181 catgggatggccctgaatatatgtcttagatttacattccttgatccagtggttaccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgggatggccctgaatatatgtcttagatttacattccttgatccagtggttaccctt 440
Query: 241 cctgccttgaggacaaactcctggggtgtagcctgattgcctgctcgcagtgcctctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgccttgaggacaaactcctggggtgtagcctgattgcctgctcgcagtgcctctgtt 500
Query: 301 cctaggacaatcattttt 318
||||||||||||||||||
Sbjct: 501 cctaggacaatcattttt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
