BAC Information

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BAC

Clone NameMSMg01-112L16
Chromosome5 (Build37)
Map Location 47,451,719 - 47,452,078
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112L16.T7 (MSMg01no112_l16.b1)MSMg01-112L16.TJ (MSMg01no112_l16.g1)
ACCAG325063AG325064
length7481,233
length of high quality
(start - end)		686 (46 - 731)---
definitionCHROMAT_FILE: MSMg01no112_l16.b1 PHD_FILE: MSMg01no112_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:58 2005CHROMAT_FILE: MSMg01no112_l16.g1 PHD_FILE: MSMg01no112_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTGTCTTGAGGCAAATAGACCTTGGTATACAGAATTTAGCCTC
ATGACACATAACAACAGAGCAAACCTCAACAGGCTTGCCACAGAGTATGG
TTGATAGACACAGTGATGCTTCATTGGAGAAAACTGAATTTAAAGCTGGT
AGCAATTGCATATAACTTCTTGGTTATGAGTGGGACCCCCTGTACACTTC
TCCCTCTCAGTATTAGGACCTGTCTCCCTAGAACTCCTGCAAGTCCTGTA
TGTGCGACTATGATCTCTATGAGTTCAAATGTGCATCAGTCCTCTTGCTT
CTGGAAGACTGTTTCCTTAGGGCCATTAACTACTTCTGGGCTCTTACAAT
CTTGCTTCCTCTTCTGCATGAAGGAAGGGGTTTACTAAAGACATCCCATT
TAGGAGGGAGTGCCCCAAAGTCTCTCACTCTCTATACATCCTCCAGTTGT
GTATCTCTGTGTTAGTCCCATCTACTGTAAACAGCTTCTCTAAGGAAGGT
TGAGTGAGACACTAATCTATGCACCTCATACCTTCTTGCTTTAAAAAATA
TCTGACAAAAACAGTGTATATGTGTGGGGGTATTAGCATCACATTTTATA
ACATACACAAACATTCTTTATGAGAAGACGAAAGGTCAATGAGAATGTGA
ATGTTATCCTAAGAAGTGGACTAGGGCTATCAGAAGAGGATGAAAGAG

CGGTACAGGAAGGGCTTCCGGGGGTGGAGGGGTAATGGGTATTTTTATTC
GCTTCGCGCGTGAGAATGACTCACTGTCACACGTTTACTTATAAAAAAAT
GGTTAAGCGAGCGTGAATACATGAGCATCGCATAGGGGGCTATAAAGGGT
AATCGGGCGGTATTTCGGTTTTAGAAAACCTACCCGTCATAGGGAGGGAG
GCGATTGACACAGTATGCGAAGGCTCGGGGGAATTAATTAAATAGATAAA
GACGCGGTATTGTAAGCCGAAAAAAACAAAAGTAAGGGCTATTAGGCGAT
GGCGATGGAAGATTCCGCCCTCTTTCATTAGTAGTTATTGACCGCCTTGC
GCAATAGGTAGGGATAGGGTAGCAAAGGAAATATGATGGGTATTTCCGCC
CTTTACCCGACCTACATTTGCGGATATACGCGACAAGTATTATATGAGTT
ATCCGTGCTTGCAATAATACGCGGATAAACGCCGACCTATTTACAAGTTT
TCTAGCACGAGCACCGTAAGGGAGGGTTTACCCCCGTTTTTTATTCCCCC
CCACGCGGCGTGAACGGCGGAGTAAATGTGCGAAGGACAGATATAGATAA
GTCGCGGCTTATTCTCCGGGGGCTTAAATACCGCTTCCTATTTGTTCGGG
CCTATTATTAACACGTTCCGGCGTAAGATATATAAAACGCACGATAATCG
CGCTCGCGCCGCGTTCGTCGCGAAGATGGCGATAATTGAAATATTAGGCT
CGTTTATCTAAATTTATTACGCGAGTCCGATGTTATTGCGGTCATTGTAG
TATGCAAATCGGCCTTGATGAGCTATTTTATTATATTGCGCGATTATATG
TATTAGGCCGCGCGTATATACTGATTTATTCGCGTGGTATTATTCTATGC
GCCGCCGTAAACACTGATAATCGCGGTTAATTATATGCGGTATCGGCCGT
TCAATACAGCGGCTCTATGACGTTCGTACGAACATATATTGCGTCCGGCT
ATTGCGGCGGTGGCGTGATAATAATCCGTATGCGTACTCGCGTAATGATA
CTCACCTCGATCTAAATTTAATCGATCGTTATCTTCGGTCGCGCCACGCT
AACCGATATTCTTTTTATTTTGTCTCGCTCGCGCGGCCGCATTATATATA
TATATTTGCACGCAGTATACATACGATCAGTACTATTACTGTATGTAACA
TTATGAAGCGACGAATTGTATAGACCGCGCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_l16.b1 MSMg01no112_l16.b1 CHROMAT_FILE:
MSMg01no112_l16.b1 PHD_FILE: MSMg01no112_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:58 2005
         (686 letters)



>mm_chr5_47450993_47452078
          Length = 1086

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Minus

                                                                        
Query: 327  gccattaactacttctgggctcttacaatcttgcttcctcttctgcatgaaggaaggggt 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 gccattaactacttctgggctcttacaatcttgcttcctcttctgcatgaaggaaggggt 1027

                                                                        
Query: 387  ttactaaagacatcccatttaggagggagtgccccaaagtctctcactctctatacatcc 446
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1026 ttactaaagacatcccatttaggagggagtgccccaaagactctcattctctatacatcc 967

                                                                        
Query: 447  tccagttgtgtatctctgtgttagtcccatctactgtaaacagcttctctaaggaaggtt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  tccagttgtgtatctctgtgttagtcccatctactgtaaacagcttctctaaggaaggtt 907

                                                                        
Query: 507  gagtgagacactaatctatgcacctcataccttcttgctttaaaaaatatctgacaaaaa 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  gagtgagacactaatctatgcacctcataccttcttgctttaaaaaatatctgacaaaaa 847

                                                                        
Query: 567  cagtgtatatgtgtgggggtattagcatcacattttataacatacacaaacattctttat 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  cagtgtatatgtgtgggggtattagcatcacattttataacatacacaaacattctttat 787

                                                                        
Query: 627  gagaagacgaaaggtcaatgagaatgtgaatgttatcctaagaagtggactagggctatc 686
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  gagaagatgaaaggtcaatgagaatgtgaatgttatcctaagaagtggactagggctatc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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