Query= MSMg01no112_p01.b1 MSMg01no112_p01.b1 CHROMAT_FILE:
MSMg01no112_p01.b1 PHD_FILE: MSMg01no112_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:14 2005
(608 letters)
>mm_chr5_80635410_80636417
Length = 1008
Score = 1077 bits (557), Expect = 0.0
Identities = 593/605 (98%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagttaaggaccaaggtcacttgggtgttttctctgcctctcagtaggcattca 63
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttacggaagaaggtcacttgggtgttttctctgcctctcagtaggcattca 263
Query: 64 ccccagtaccaggctcttagccttcatttggtaaaatcaaatggttggcatttgttttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccccagtaccaggctcttagccttcatttggtaaaatcaaatggttggcatttgttttaa 323
Query: 124 aatcataatatatttgagtaaaatattctgtagatctgttggttcacagagaaaatgttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatcataatatatttgagtaaaatattctgtagatctgttggttcacagagaaaatgttt 383
Query: 184 tgtgtaggcgatatctgctttttctacgtacaagttaaagacactgtttaaaagcacaaa 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgtaggcgatatctgctttttctacatacaagttaaagacactgtttaaaagcacaaa 443
Query: 244 atatgaaaggtctttgatacttgctttaaatttttatgggtaagaagtgatacagatttc 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 atatgaaaggtctttgatacttgctttaaattttcatgggtaagaagtgatacagatttc 503
Query: 304 actctttattggatatttaatttatttacatttcaaatattatcccatttgccaatttcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actctttattggatatttaatttatttacatttcaaatattatcccatttgccaatttcc 563
Query: 364 ccgccccagaaactccctatcttttaccccctccacctgcttctatgagggtgtgccctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccgccccagaaactccctatcttttaccccctccacctgcttctatgagggtgtgccctc 623
Query: 424 ccacctacccactcttgcatcccctcctatgtattccccctataatgtggatttgagcct 483
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct: 624 ccacctacccactcttgcctcccctcctatgtattcccc-tatactgtggatttgagcct 682
Query: 484 tcacaggaccaagggcctcttctcccattaatgcctgacaaagccattctctgctacata 543
|||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 683 tcacaggaacaagggcctcttctcacattaatgcctgacaaagccatcctctgctacata 742
Query: 544 cacagttggagccatgggtccttccttctgtacactttgtttggttggtggcttagaccc 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cacagctggagccatgggtccttccttctgtacactttgtttggttggtggcttagaccc 802
Query: 604 tggga 608
|||||
Sbjct: 803 tggga 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_p01.g1 MSMg01no112_p01.g1 CHROMAT_FILE:
MSMg01no112_p01.g1 PHD_FILE: MSMg01no112_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:14 2005
(507 letters)
>mm_chr5_80758584_80759490
Length = 907
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Minus
Query: 1 ttttccctatatagaatataaggatattcttctctaattaacaacaaaaatatactgcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 701 ttttccctatatagaatataaggatattcttctctaattaacaacaaaaatatactgtga 642
Query: 61 tgtactgttatgtagttaaaatatatgacattaaaattgatatataatattacttcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgtactgttatgtagttaaaatatatgacattaaaattgatatataatattacttcttta 582
Query: 121 ttaatgcaccaaatataatcagtatattttttaaataccatattccaaaactctggattt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 581 ttaatgcaccaaatataatcagtatattttttaaataccatgttccaaaactctggattt 522
Query: 181 tcctcatattcaatactgttttttgattaagataatattatcaaagaaactgtaggaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcctcatattcaatactgttttttgattaagataatattatcaaagaaactgtaggaaaa 462
Query: 241 gaaagtaatcctaagctaatgttgccctacttaataattaattctttataaggaaatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaaagtaatcctaagctaatgttgccctacttaataattaattctttataaggaaatgat 402
Query: 301 cagtcatatatatttcatacagaaggtttcgttattgtgctgtaccaattttatagatga 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 401 cagtcatatatatttcatacagaaggtttcgttattgtgctgtagcaattttatagatga 342
Query: 361 agaatgaaccattctagctaagtaatgaggcaatatttgatttacagaggaatccaaaaa 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ataatgaaccattctagctaagtaatgaggcaatatttgatttacagaggaatccaaaaa 282
Query: 421 ttgaaaatatttgtatgtgttgtttttctgtgtgcatacgtgtatgtgtctaagggggtt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 ttgaaaatatttgtatgtgttgtttttctgtgtgtatacgtgtatgtgtctaagggggtt 222
Query: 481 ggaaatatatagttgtgattg 501
|||||||||||||||||||||
Sbjct: 221 ggaaatatatagttgtgattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
