Query= MSMg01no113_c14.b1 MSMg01no113_c14.b1 CHROMAT_FILE:
MSMg01no113_c14.b1 PHD_FILE: MSMg01no113_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:31 2005
(601 letters)
>mm_chr5_5985182_5986187
Length = 1006
Score = 1114 bits (576), Expect = 0.0
Identities = 594/602 (98%), Gaps = 5/602 (0%)
Strand = Plus / Minus
Query: 5 gaattctttggactggctttatggtctcaacttaacttcttcctcagaggaatactttgg 64
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 806 gaattctttggactggatttatggtctcagcttaacttcttcctcagaggaatactttgg 747
Query: 65 agacaaagtctctgacaagtgtgctttgtgaaaaaggcacctctgcctccacacttcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 agacaaagtctctgacaagtgtgctttgtgaaaaaggcacctctgcctccacacttcctt 687
Query: 125 gcacaaagtgaactcccaacactttgctctagctaatagttcaagggtcattatttcttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcacaaagtgaactcccaacactttgctctagctaatagttcaagggtcattatttcttg 627
Query: 185 ctgccgttttatgaacagaaaggctttctgccttagactctgtcgacctgaggtaattct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctgccgttttatgaacagaaaggctttctgccttagactctgtcgacctgaggtaattct 567
Query: 245 tgaatgtatagtctcttctcattttacttctctgggctcgagactgattaatacctactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgaatgtatagtctcttctcattttacttctctgggctcgagactgattaatacctactt 507
Query: 305 ggaaaatcctaaaatgtagctgcatgcattattaataacatcattaggaagtaccatgca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaaaatcctaaaatgtagctgcatgcattattaataacatcattaggaagtaccatgca 447
Query: 365 tttgcatctggatgagaatattggcaaaaaaaa----aaaagaaagaaaaaaa-gggaaa 419
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 446 tttgcatctggatgagaatattggcaaaaaaaataaaaaaagaaagaaaaaaaagggaaa 387
Query: 420 tcaaaataatgattctcggtggtttaaagaagttccattggattcaatgtacgcctgatg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 386 tcaaaataatgattctcggtggtttaaagaagttccattggattcaatgtacacctgatg 327
Query: 480 attatagtgattctcggtgtttttaaggagttccactggactcaatgcatacatgatgat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attatagtgattctcggtgtttttaaggagttccactggactcaatgcatacatgatgat 267
Query: 540 tacaaatcctcttcacagttcacaagttgcacttcagctctttctcctactcacacctga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacaaatcctcttcacagttcacaagttgcacttcagctctttctcctactcacacctga 207
Query: 600 tt 601
||
Sbjct: 206 tt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1006
Length adjustment: 10
Effective length of query: 591
Effective length of database: 996
Effective search space: 588636
Effective search space used: 588636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_c14.g1 MSMg01no113_c14.g1 CHROMAT_FILE:
MSMg01no113_c14.g1 PHD_FILE: MSMg01no113_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:31 2005
(472 letters)
>mm_chr5_5864567_5865436
Length = 870
Score = 603 bits (312), Expect = e-177
Identities = 355/378 (93%), Gaps = 16/378 (4%)
Strand = Plus / Plus
Query: 106 gtcatcttggctgcacatacgtgtctgttactatcagagtgtggaggaagcaaaatagtg 165
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtcatcttggctgcacatatgtgtctgttactatcagagtgtggaggaagcaaaatagtg 357
Query: 166 gagttaagcttggaaaggccacctaacctgttcctctcctcctcgttgaaaattaaggct 225
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gagttaagcttggaaagaccacctaacctgttcctctcctcctcgttgaaaattaaggct 417
Query: 226 c--------aaaaaaaaattaaggtgaggactgaatgagccttggccgttacttacttgt 277
| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 418 caaaaaaaaaaaaaaaaattaaggtaaggactgaatgagccttggccgttacttacttgt 477
Query: 278 tcggtgttaggacagaggaagtatagtgtctggtggtgagaaagaagaggaggagttgca 337
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 tcagtgttaggacagaggaagtatattgtctggtggtgagaaagaagaggaggagttgca 537
Query: 338 ctataattggttttttaaaacagtaactgcaaagccagttcaagaggaggagga---aaa 394
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 538 ctataattggttttttaaaacagtaactgcaaagccagttcaagaggaggaggaggaaaa 597
Query: 395 ccagaagcacaaactgagcaatgttagcggaagaacaatagaagtttgtatgcagggaac 454
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 598 ccagaagcacgaac-----aatgttagtggaagaacaatagaagtttgtatgcagggaac 652
Query: 455 tgtgcttgtcccttccct 472
||||||||||||||||||
Sbjct: 653 tgtgcttgtcccttccct 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 870
Length adjustment: 10
Effective length of query: 462
Effective length of database: 860
Effective search space: 397320
Effective search space used: 397320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
