Query= MSMg01no113_f04.b1 MSMg01no113_f04.b1 CHROMAT_FILE:
MSMg01no113_f04.b1 PHD_FILE: MSMg01no113_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:43 2005
(272 letters)
>mm_chr5_19221542_19222214
Length = 673
Score = 466 bits (241), Expect = e-136
Identities = 262/269 (97%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcaatgtgcctgcctaatttttgtctga-aaatcttgtttatatgagcataac 63
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 406 gaattcagcaatgtgcccgcctaatttttgtctgacaaatcttgtttatatgagcataac 347
Query: 64 attcaggattatggtcatttataacatttcaaattgaatgtgagtttatctctttgggct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 346 attcaggattatggtcatttataacatttcaaattgaatgtgagtttatctctttggact 287
Query: 124 atgctgtctcatttgagaattctataaaatcaacttctatcaacttacccaagtcatctt 183
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 286 atgctgtctcatttgggaattctacaaaatcaacttctatcaacttacccaagtcatctt 227
Query: 184 ctttctctctcaacaacaaaaacaacaacagcagcagcagcagcagcagcaggaggagga 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 226 ctttctctctcaacaacaaaaacaacaacagcagcagcagcagcagcaacaggaggagga 167
Query: 244 agaggaggaggaggaggaggaggaggagg 272
||||||||||||||||||||||||||||
Sbjct: 166 ggaggaggaggaggaggaggaggaggagg 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 34
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space: 174632
Effective search space used: 174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no113_f04.g1 MSMg01no113_f04.g1 CHROMAT_FILE:
MSMg01no113_f04.g1 PHD_FILE: MSMg01no113_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:43 2005
(416 letters)
>mm_chr5_19085709_19086524
Length = 816
Score = 797 bits (412), Expect = 0.0
Identities = 415/416 (99%)
Strand = Plus / Plus
Query: 1 atgttgcaaatcacaacttgtttgctaaaggtcaaggtcactaactatccattaactctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttgcaaatcacaacttgtttgctaaaggtcaaggtcactaactatccattaactctg 260
Query: 61 aaaactgttaaaggaaatatgaaaagaaagcagtttgctgagtgctctcaagatcaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactgttaaaggaaatatgaaaagaaagcagtttgctgagtgctctcaagatcaactc 320
Query: 121 atgccagttacatgaaatacattgaatttatatatttattgcaatttgatatgagaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccagttacatgaaatacattgaatttatatatttattgcaatttgatatgagaaata 380
Query: 181 gtgcaagtaaaagcatttggaactgaataactgtaaccacccaaaactgtcgtcattgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcaagtaaaagcatttggaactgaataactgtaaccacccaaaactgtcgtcattgtc 440
Query: 241 acgagaatccattgtttcaacttctatctacagacttgtccttaattgaatctatttggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgagaatccattgtttcaacttctatctacagacttgtccttaattgaatctatttggt 500
Query: 301 ctgttcatgagacacttcaaactacacaagataatctttgagttttatacattttttata 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ctgttcatgagacacttcaaactacacaggataatctttgagttttatacattttttata 560
Query: 361 ttcaagagtagggctgctacatattaaacatcaacagaaacacaaatctcactcag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaagagtagggctgctacatattaaacatcaacagaaacacaaatctcactcag 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
