Query= MSMg01no113_g08.b1 MSMg01no113_g08.b1 CHROMAT_FILE:
MSMg01no113_g08.b1 PHD_FILE: MSMg01no113_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:48 2005
(574 letters)
>mm_chr5_62630419_62631392
Length = 974
Score = 1089 bits (563), Expect = 0.0
Identities = 569/571 (99%)
Strand = Plus / Minus
Query: 4 ggaattccaggctgtagccagaagctgagagtctctagcactttggtatttagactaagt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ggaattccaggctgtagccagaagctgagagtctctagcactttggtatttagactaagt 715
Query: 64 catctggaaagagaaggcctaatatctacttgttaagacttaaaatttgaataaaagcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 catctggaaagagaaggcctaatatctacttgttaagacttaaaatttgaataaaagcag 655
Query: 124 agtcggcttagaagcacagagtagagattgtatggggatgaggcaggacaacacttcagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 agtcggcttagaagcacagagtagagattgtatggggatgaggcaggacaacacttcagg 595
Query: 184 aaatatgaacgggccagctgtgaccatgaagggatgtgcacagaggatcgtgtgtagctt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 594 aaatatgaacgggccagctgtgaccatgaagggatgtgcacagaggatcgtgtatagctt 535
Query: 244 gccagagttagtttttatccatttcctggaggaatactgatcaaaaaggctgagatatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gccagagttagtttttatccatttcctggaggaatactgatcaaaaaggctgagatatgt 475
Query: 304 cagctaactggaatccccactgggaaatctgattgtgaagagaggtgataatatatcagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cagctaactggaatccccactgggaaatctgattgtgaagagaggtgataatatatcagg 415
Query: 364 gctttcagtctgtccccttgtcaaattcctgacttatgctctatgctcttctctaggact 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gctttcagtctgcccccttgtcaaattcctgacttatgctctatgctcttctctaggact 355
Query: 424 tctccaggcagccctctactcacaactctactttctgactgataaatatgcctttccttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctccaggcagccctctactcacaactctactttctgactgataaatatgcctttccttc 295
Query: 484 actcttccaggattatggtaattggtttcccacgtgaccttgtatacccatatcttatct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actcttccaggattatggtaattggtttcccacgtgaccttgtatacccatatcttatct 235
Query: 544 gtagtatctttagagccatccagaagcttgt 574
|||||||||||||||||||||||||||||||
Sbjct: 234 gtagtatctttagagccatccagaagcttgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_g08.g1 MSMg01no113_g08.g1 CHROMAT_FILE:
MSMg01no113_g08.g1 PHD_FILE: MSMg01no113_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:48 2005
(494 letters)
>mm_chr5_62536499_62537393
Length = 895
Score = 801 bits (414), Expect = 0.0
Identities = 474/498 (95%), Gaps = 13/498 (2%)
Strand = Plus / Plus
Query: 1 agctgggataattaataaatgccatggtgctcccaaacaaatgcataatttggtttgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgggataattaataaatgccatggtgctcccaaacaaatgcataatttggtttgagt 260
Query: 61 caaataaagtgcacaatccaaggacaatcaacaagacttttcttgcttgtgc--ttaaga 118
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 261 caaataaagtgcacaatccaaggacaatcaacaagacttttcttgctt-tgcacttaaga 319
Query: 119 ggtttgaaaggcttaggtggcatctggccctggattagttttctttttttcttttctttt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggtttgaaaggcttaggtggcatctggccctggattagttttctttttttcttttctttt 379
Query: 179 cttttttttttgtaataatttttcttgaacacatgaagctactatgaaaaagccttgata 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttttttt---gtaataatttttcttgaacacatgaagctactatgaaaaagccttgata 436
Query: 239 aa-agtaaaaatgtctagtttggattagcatagtcagagtactaattggctgtttactag 297
|| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 437 aagagtaaaaatatctagtttggattagcatagtcagagtactaattgactgtgtactag 496
Query: 298 gggaaagtaaatatatatgtaagtattctttattttcacaatgccattaaatttttatat 357
||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||
Sbjct: 497 gggaaagtaaatataca----agtattctttatttttataatgccattaaatttttatat 552
Query: 358 ttatatatgaatttatgaaagccatctaagctttgtcaaagaa-tagttgtaaggtaaat 416
||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||
Sbjct: 553 ttatatatgaatttatgaaagccctctaagctt-gtcaaaaaaatagttgtaaggtaaat 611
Query: 417 gatttaaaaagagatttatttaaggaaccatatatatgtattattaaaattttcatagtt 476
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 612 gatttaaaaagagatttatttaaggaaccataaagatgtattattaaaattttcatagtt 671
Query: 477 gtatttgttctagtgaaa 494
|||||||||||||||||
Sbjct: 672 atatttgttctagtgaaa 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
