BAC Information

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BAC

Clone NameMSMg01-113K01
Chromosome5 (Build37)
Map Location 44,879,391 - 44,879,905
singlet/doubletsinglet
Overlap geneLdb2
Upstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100041481, LOC100040737, Qdpr, EG624224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K01.T7 (MSMg01no113_k01.b1)MSMg01-113K01.TJ (MSMg01no113_k01.g1)
ACCAG325718AG325719
length638692
length of high quality
(start - end)
---515 (72 - 586)
definitionCHROMAT_FILE: MSMg01no113_k01.b1 PHD_FILE: MSMg01no113_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:07 2005CHROMAT_FILE: MSMg01no113_k01.g1 PHD_FILE: MSMg01no113_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACCCACCTTTCCCCCCCCCATTTTCTTACTACTATXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCCCAAAAAGAGATCCGNCGGAAAATTCATCAT
GTATCCCACCTGTGAAAACACAATGAAAAAACCCATAAATGGAAAAAAAC
CCCACCCACGGGGGGGTATATTATTTCTTTTCCTGCCAAAGCATGGGCTC
TGGATGCCTGAAACCAAACAAAAAACATCTGGAACAATTTTCTCCGGGGG
AAAACCTGGGAAATGGGTTTTCCCCTCTTTTCCGGGCGCCCCAAAAAAAA
ATAAAAAAAAAAGTTTTTTGTGTGAGAGGGGGGAAAAAACACCTCGCCCC
AATGGGGATTTCCCCCCCTTCTTCCAAAAAAATAAAAATTGTGGGAAAAC
CCCTCCCCCCCCCCCTTAAAGAAAAACCTCGGTGTCCGCCAGGACCTCGC
TTAATATTCTCCTCTTTTAGCCCCCACCGTCTTTTTTCCCCCCTATCACG
ACACGCGCCGACATCCCCTTATATTTAATACAATAACAACCTTCCCCCCG
GCAAATACCGCCCCTCCCTCGCGCCCCCTTTTTTCCGCCCCGCGGGAAAA
AGGGATGCTGTGCTCTTACTTCTTAATAGTGGAAAAAG
ATGATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCATGTCTGGGGGCTAGAAGCCTGTAG
GCAAGGTGTAAGAAGGACCATGCTCTTCTGGATGCTGATGAAGAAGCCTC
GTGCTTTCAGGATGTTGATGTCTGCAGCATCTTTGGTTTTCCTGTCTTGT
CACTTTATCATCCCAGTGTCTGCCTCCCTCTCCATATGTCTTTTCCCAGT
ATGCAATTGCATCATCTCCTCTTGTAAGAAGGACATAAGTCATTGGGTTG
AGGGCACACCTGAAATCCAGCAACATTTTATGTTGCAATCCTTTAATTAC
ATCTGCAAAGATTCTGTTTTCAGAATCATGTTCCAAAGTTCCAGGTGGAC
ATGAAAATTTGAAGGACTTTCTGTCTGTCTGTCTGTCTTTAAATAAGTGT
GTTTTTCATTCTGTCTGAAGTACAGGTCACTACCACAGTAGCTTTCAGCA
CCCAGGTCCATGACATATATACCCTCTATTTGGTAGCCTGACAGGTGTTG
CTTGCCTTTGTGCCTGTAGCCCAAGAGTGACACTAGCAGTCTTAGTGCTG
GCTCATCTTCCTTTGGTTGCTTGTCCAGGCTAGTATTATTATTGCTAACT
GCCCATTTGAAGTCTCACTAGTGAAATGTCCACTATGAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k01.g1 MSMg01no113_k01.g1 CHROMAT_FILE:
MSMg01no113_k01.g1 PHD_FILE: MSMg01no113_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:07 2005
         (515 letters)



>mm_chr5_44879191_44880105
          Length = 915

 Score =  919 bits (475), Expect = 0.0
 Identities = 505/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcatgtctgggggctagaagcctgtaggcaaggtgtaagaaggaccatgctcttctgg 60
           ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 201 tctcaggtctgggggctagaagcctggaggcaaggtgtaagcaggaccatgctcttctgg 260

                                                                       
Query: 61  atgctgatgaagaagcctcgtgctttcaggatgttgatgtctgcagcatctttggttttc 120
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atgctgatgaagaagccttgtgctttcaggatgttgatgtctccagcatctttggttttc 320

                                                                       
Query: 121 ctgtcttgtcactttatcatcccagtgtctgcctccctctccatatgtcttttcccagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcttgtcactttatcatcccagtgtctgcctccctctccatatgtcttttcccagta 380

                                                                       
Query: 181 tgcaattgcatcatctcctcttgtaagaaggacataagtcattgggttgagggcacacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaattgcatcatctcctcttgtaagaaggacataagtcattgggttgagggcacacct 440

                                                                       
Query: 241 gaaatccagcaacattttatgttgcaatcctttaattacatctgcaaagattctgttttc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatccagcaacattttatgttgcgatcctttaattacatctgcaaagattctgttttc 500

                                                                       
Query: 301 agaatcatgttccaaagttccaggtggacatgaaaatttgaaggactttctgtctgtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaatcatgttccaaagttccaggtggacatgaaaatttgaaggactttctgtctgtctg 560

                                                                       
Query: 361 tctgtctttaaataagtgtgtttttcattctgtctgaagtacaggtcactaccacagtag 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tctgtctgtaaataagtgtgtttttcattctgtctgaagtacaggtcactaccacagcag 620

                                                                       
Query: 421 ctttcagcacccaggtccatgacatatataccctctatttggtagcctgacaggtgttgc 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcagcacccaggtccatgatatatataccctctatttggtagcctgacaggtgttgc 680

                                              
Query: 481 ttgcctttgtgcctgtagcccaagagtgacactag 515
           ||||||||| |||||||||||||||||||||||||
Sbjct: 681 ttgcctttgcgcctgtagcccaagagtgacactag 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)