BAC Information

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BAC

Clone NameMSMg01-113P06
Chromosome5 (Build37)
Map Location 108,300,466 - 108,300,721
singlet/doubletsinglet
Overlap geneEvi5
Upstream geneHfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, 1700013N18Rik
Downstream geneRpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113P06.T7 (MSMg01no113_p06.b1)MSMg01-113P06.TJ (MSMg01no113_p06.g1)
ACCAG325955AG325956
length752692
length of high quality
(start - end)
51 (111 - 161)256 (212 - 467)
definitionCHROMAT_FILE: MSMg01no113_p06.b1 PHD_FILE: MSMg01no113_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:32 2005CHROMAT_FILE: MSMg01no113_p06.g1 PHD_FILE: MSMg01no113_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGTTTATCCCCGACCCTGTCTCAAATAAATGAATAATAAAACTCACAA
CGCCAAATTGAGTTGTGTGTAATACTCTTAAAGGTCAAATATGTGGATCG
GGGTCAGGTGGTGAGGGTGGGATGTTTTAATCTTTCCTATTCCACCCTCT
CTTTTCCACCATCTTTCCCCCCCTTATTCTCAACTTTGCGATTACCTTTT
CCCCTCCCCCCCCCCTCACTGCTTTCCCTCCCTTTATCTACACCCCCCTT
TTTTTTTATTTTCAAACTTTTTTTTTTACCTGTTTCTTTCCTGTTCACCG
CAACTTTTTAATTTTTTTTTCCCTTCTTTTCCTATTTTGTCTCTTATTAC
TTAACTCTCCCTCCCCCTTTTTTTCCCCACTCTCTTTTTTCCTTCTATAC
CCCCTTCCTTTTCTTACCTTTTTCCCCCTCTACATTCCCCTCCTCTTCCT
TTTTTCTCCTCTTACTTTTTTTTCCCCCACCCCTCCTCCCTTTATTTTTA
TCCCTCTTTTTTTTCCCCGCCCCCTCCTTTTTTCTCCACCTATAATTATC
TCCCTCCTCCTGTTATCCCCCTTCATTTTAATCACACTATTTATCACCTC
TCCCCCTTCTTAAATACCCCATCTCTCTCTCAAACCTTTTTTTTAACCTC
TTCACTTCAGTACAACTTTCACTTACCCTCATTTTTTATTAAATCTTTTC
TG
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAAGGAGGCAAAACTGAATGTGGTGGA
AACAGTCTTGGCAGGGCTGAGAAACAGTTTGTGGTGCTCAGCATGTGACA
GTGGAATTATTTTGAAATACATGCTCTCAAAATAATAGAATAGTCCTGAG
GAGGCCATTAACTCTGGCCCTCCAACATTATCCCTGACTAATGCCTTTCT
CTCCCTTGTCCCAAGAGTGTCAGTTTATTTGGTAAAAGAGCTTACACTTT
AATGCCCCACTTTAATTGCTAATTCTAGCGCTCACAAGTGCTTGGGCACT
GGCGTAAGTGATATTCCACTGTGTGAATTCTACTCTGACACCATCTCTGC
TCCTAAGGTTCAAATGCTCACTCTCTAAAGTCTAGATTCTAGTCTATACC
CTTCCACGGAAGATTCAGAGGACCTGTGGCAGCGTTACAGCAGTGCACAG
GACGCTTTTATTTACAGTCAAGTCAGTTAGAAATTCAAAGTTCTGCCGTC
CATCCTGTATACCCTTATCATGGAGTTAGGGCACTGCTCAGGCAGGAAGC
TCCTCTAAGCCTGCCAAAGGTTTAGTCACGGAATAGCGTGACTGTGACTG
CCAAAGGTGTTCAAGCCAGCCGTATGAAACACTTTGAATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_p06.g1 MSMg01no113_p06.g1 CHROMAT_FILE:
MSMg01no113_p06.g1 PHD_FILE: MSMg01no113_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:32 2005
         (256 letters)



>mm_chr5_108300266_108300921
          Length = 656

 Score =  464 bits (240), Expect = e-135
 Identities = 252/256 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctggccctccaacattatccctgactaatgcctttctctcccttgtcccaagagtgtc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctctggccctccagcattatccctgactaatgcctttctctcccttgccccaagagtgtc 260

                                                                       
Query: 61  agtttatttggtaaaagagcttacactttaatgccccactttaattgctaattctagcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttatttggtaaaagagcttacactttaatgccccactttaattgctaattctagcgc 320

                                                                       
Query: 121 tcacaagtgcttgggcactggcgtaagtgatattccactgtgtgaattctactctgacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacaagtgcttgggcactggcgtaagtgatattccactgtgtgaattctactctgacac 380

                                                                       
Query: 181 catctctgctcctaaggttcaaatgctcactctctaaagtctagattctagtctataccc 240
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 catctctgctcctaaggctcaaatgcttactctctaaagtctagattctagtctataccc 440

                           
Query: 241 ttccacggaagattca 256
           ||||||||||||||||
Sbjct: 441 ttccacggaagattca 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)