Query= MSMg01no114_h16.b1 MSMg01no114_h16.b1 CHROMAT_FILE:
MSMg01no114_h16.b1 PHD_FILE: MSMg01no114_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:10 2005
(385 letters)
>mm_chr5_141590381_141591166
Length = 786
Score = 648 bits (335), Expect = 0.0
Identities = 371/385 (96%), Gaps = 5/385 (1%)
Strand = Plus / Minus
Query: 4 ggaattctaggcagatgtcataccacttcagccaaacattctagtcctccttttgctttt 63
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 702 ggaattctaggcagatgtcaaaccacttgagccaaacattctagtcctccttttgctttt 643
Query: 64 tatcttcagacagtctcactatgttgcctgggatggtcttgaaactggaattctcctgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tatcttcagacagtctcactatgttgcctgggatggtcttgaaactggaattctcctgct 583
Query: 124 gcagtctccagagcagctggataacggacatgagggttcccaagactagcaccctagaaa 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 582 gcagtctccagagcagctggataatggacatgagggttcccaagactagcaccctagaaa 523
Query: 184 attttctgagcattgctggtgactttaactacaaaaaattg-aaaaaaaaaaaaagcaga 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 522 attttctgagcattgctggtgactttaactacaaaaaattgaaaaaaaaaaaaaagcaga 463
Query: 243 ggacatcccacaggagaggagccaaatgaccagctcatcagttaggaagaaaggagctac 302
||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 462 ggatatcccacaggagaggagccaaatgaccagcttatcagccatgaagaaaggagctac 403
Query: 303 cctaagtgagggctataagctagatttgcatgttaacttattttatagtgtgtgtatgta 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctaggtgagggctataagctagatttgcatgttaacttattttatagtgtgtgtatgta 343
Query: 363 catgtgtatgc----gtgtgtgtgt 383
||||||||||| ||||||||||
Sbjct: 342 catgtgtatgcacatgtgtgtgtgt 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space: 292152
Effective search space used: 292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_h16.g1 MSMg01no114_h16.g1 CHROMAT_FILE:
MSMg01no114_h16.g1 PHD_FILE: MSMg01no114_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:10 2005
(573 letters)
>mm_chr5_141434441_141435413
Length = 973
Score = 1093 bits (565), Expect = 0.0
Identities = 571/573 (99%), Gaps = 1/573 (0%)
Strand = Plus / Plus
Query: 1 aagaccatcctggatgctcacactagtccattttattcaacatactagagttcccagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aagaccatcctggatgctcacactagtccattttattcaacatactagagttcccagcca 261
Query: 61 atctaaaaaggcaagaaagagaaataagagggtggaatttggaaagaaataatatagttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atctaaaaaggcaagaaagagaaataagagggtggaatttggaaagaaataatatagttg 321
Query: 121 tcattttttttgcagacaacacaatttccctaaatatctaaaaggagctacaaaaaattt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcattttttt-gcagacaacacaatttccctaaatatctaaaaggagctacaaaaaattt 380
Query: 181 cctggaatcagttaacgataaccaacaacaaatattcaccaagttagcaaggttatagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctggaatcagttaacgataaccaacaacaaatattcaccaagttagcaaggttatagga 440
Query: 241 cagaagatcaatatacaacactcaagaaaacctgacatataaaaacatatgatgcttaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaagatcaatatacaacactcaagaaaacctgacatataaaaacatatgatgcttaag 500
Query: 301 atttaagtgtataaacgatgtccacattgaaaatacaaggacatgctaagaaaagtcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttaagtgtataaacgatgtccacattgaaaatacaaggacatgctaagaaaagtcaag 560
Query: 361 gagccttaaatcaaatggaagggatataccatgtccatgggctgtatgattgttcaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagccttaaatcaaatggaagggatataccatgtccatgggctgtatgattgttcaactt 620
Query: 421 gttaatgatcttaggatctggagtctcggaaaattctagtctaatcttgattttttgttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaatgatcttaggatctggagtctcggaaaattctagtctaatcttgattttttgttg 680
Query: 481 ttgttgctgttgagtgttagcaaaataatttttaaatgcatattaagaagctagagggct 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgttgttgttgagtgttagcaaaataatttttaaatgcatattaagaagctagagggct 740
Query: 541 gaggagagggttcagtgatgaagagtgctggct 573
|||||||||||||||||||||||||||||||||
Sbjct: 741 gaggagagggttcagtgatgaagagtgctggct 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
