BAC Information

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BAC

Clone NameMSMg01-114K03
Chromosome5 (Build37)
Map Location 130,551,222 - 130,551,602
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040441, Gpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp
Downstream geneTpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K03.T7 (MSMg01no114_k03.b1)MSMg01-114K03.TJ (MSMg01no114_k03.g1)
ACCAG326465AG326466
length699728
length of high quality
(start - end)
552 (49 - 600)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no114_k03.b1 PHD_FILE: MSMg01no114_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:21 2005CHROMAT_FILE: MSMg01no114_k03.g1 PHD_FILE: MSMg01no114_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCTTTGTCTTTGTGTCTGTCTGTCTGCCCATCTATCTGTCT
TCAGTGCAGGGGATTGAACCCAAAGGCTTCCTTGAGCGTGGTAGACAAGT
GCTTTACCTCTGAGTCATACTCCCAGCCCCTCACTAGGGGATTCTAGGCA
ATCTCAACCACTAAGCAACACCCCTAACACAGAGTTCCATTTATTTTCTT
TTAAAGTTTATTTCACATGTATGCGATACATGGGTGTATGGGTGATGGCA
CATGCATGCCATGGTGTGCATGTGAAGGTCAAGGGACAACTTTTGGATGT
TGGTTCTCACCTTTTATGGTGGGTTCTATAGATTGAACTCAAGCTGTCAG
GCTTGCACAGAGTCTTAATTAGGGTTCCTATTGCTGACCAAAAAGCAAGT
TGGGGAGGAAAAGGTTTATTTGGCTTATACTTCTACATTGCTCTTCATCA
TTGAAGGAAGTCAGGACAGGAACTCAAACAAGACAGGAACCTGGAGACAA
GAGCTGATGCAGAGGTCATGGAGGGATGCTGCTTGCTTACTTGCTCCCAT
GGATTGCTTAGGCTGCTTTCTTGGAGAACCAAGGATCACCAGCCTATGAA
ATGGCACCCCCCATAGTGGGCTGGGCCCTCCCCCATGAATCACTAATTA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGATGAATTTAAGATGGGTGTGT
TGAACTTGGTATGGTGGCCTATGCACGAGAGAGGCAGGAGGATCTGAGTT
CGAGGACAACCTACAGAGCAAATAGCCTGGGGCTACCAAGAAAAACCCTG
CCTTGAAAAACCAAAGGAAGAAAAAAAGAAGGCACGTTGATGCACTCCTT
CAAACACAGCAGCAAGGGGGTTGAAGCTGGAGGTTTGCAAGCCCTGGATC
AGCCTGGACTACATAATAAGACCGTATCTGAAAAGAAATTTAATAAATCC
AGCATTCATTTAATTCTAGGACCCACCAAACAATATTATCACAAAATATT
TTTCCCTCCATTATTATCTCGCCACTCTTACTCATTTCCTCTCTCTTCCA
TTGAGAAGGCACACTAGTTATTTGTCCCAGGTGTGGCACTCTGCCTTTCT
CAGTAGCGACAGGTCTGTCTGTCTGTCTCACTTTGGGGACATACCCATGC
TTCAGTGAACGCAGAATCTAAATGTCCGCCAGTATAGAGTGACCATTTCT
GCCTTTGCGATAAATAGGGAGTCTTTCGAAGTATTCTGGTCCCTGACCGC
TGAGGATTCCCTGCCCGGCCCCACTAAGTTTTCAGCCCTTCCAGGAAAGT
GCAGCTGGCCAGTGTTCACGATGTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k03.g1 MSMg01no114_k03.g1 CHROMAT_FILE:
MSMg01no114_k03.g1 PHD_FILE: MSMg01no114_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:21 2005
         (446 letters)



>mm_chr5_130550761_130551602
          Length = 842

 Score =  698 bits (361), Expect = 0.0
 Identities = 378/385 (98%), Gaps = 4/385 (1%)
 Strand = Plus / Minus

                                                                       
Query: 62  gaggatctgagttcgaggacaacctacagagcaaatagcctggggctaccaagaaaaacc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaggatctgagttcgaggacaacctacagagcaaatagcctggggctaccaagaaaaacc 783

                                                                       
Query: 122 ctgccttgaaaaaccaaaggaagaaaaaaagaaggcacgttgatgcactccttcaaacac 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctgccttgaaaaaccaaaggaagaaaaaaagaaggcacgttgatgcactccttcaaacac 723

                                                                       
Query: 182 agcagcaagggggttgaagctggaggtttgcaagccctggatcagcctggactacataat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agcagcaagggggttgaagctggaggtttgcaagccctggatcagcctggactacataat 663

                                                                       
Query: 242 aagaccgtatctgaaaagaaatttaataaatccagcattcatttaattctaggacccacc 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 662 aagaccgtatctgaaaagaaatttaataaatccagcattcatttaattctaggacccaac 603

                                                                       
Query: 302 aaacaatattatcacaaaatatttttccctccattattatctcgccactcttactcattt 361
           ||||||||||||||||||||||||| |||||||||||   || |||||||||||||||||
Sbjct: 602 aaacaatattatcacaaaatatttt-ccctccattat---cttgccactcttactcattt 547

                                                                       
Query: 362 cctctctcttccattgagaaggcacactagttatttgtcccaggtgtggcactctgcctt 421
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 546 cctctctcttccattgagaaggcacaatagttatttgtcccaggtgtggcactctgcctt 487

                                    
Query: 422 tctcagtagcgacaggtctgtctgt 446
           |||||||||||||||||||||||||
Sbjct: 486 tctcagtagcgacaggtctgtctgt 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 842
Length adjustment: 10
Effective length of query: 436
Effective length of database: 832
Effective search space:   362752
Effective search space used:   362752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)