Query= MSMg01no114_k12.b1 MSMg01no114_k12.b1 CHROMAT_FILE:
MSMg01no114_k12.b1 PHD_FILE: MSMg01no114_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
(428 letters)
>mm_chr5_5752978_5753805
Length = 828
Score = 804 bits (416), Expect = 0.0
Identities = 425/428 (99%)
Strand = Plus / Minus
Query: 1 aatccttacctctttatttcattcacataaatggtatgtattcattaaaggcaggaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatccttacctctttatttcattcacataaatggtatgtattcattaaaggcaggaagca 569
Query: 61 aatatttaattttggtaatttcaaagtttacacttcctagctaaacagccttgaactgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatatttaattttggtaatttcaaagtttacacttcctagctaaacagccttgaactgtg 509
Query: 121 acgagttctgaactcagtcattgctgtccatctcaatttacattttcttctttcttctag 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acaagttctgaactcagtcattgctgtccatctcaatttacattttcttctttcttctag 449
Query: 181 tccctgaaaaacacgtgctccggcttctgctcaaagatcagccttgtgcagtacaaggct 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccctgaaaaacacatgctccggcttctgctcaaagatcagccttgtgcagtacaaggct 389
Query: 241 ttatctcaccttcattcaccttaattggtctcttttcctacatcttaaatgcctgtccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttatctcaccttcattcaccttaattggtctcttttcctacatcttaaatgcctgtccca 329
Query: 301 ttgcgttcctatccttatgtctgttagtccagagctgccccaactatctcctttcccttt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgtgttcctatccttatgtctgttagtccagagctgccccaactatctcctttcccttt 269
Query: 361 tcctaccctttcttatttactagaagaccatgactattccctctgcccttccccagttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcctaccctttcttatttactagaagaccatgactattccctctgcccttccccagttct 209
Query: 421 tcctcggt 428
||||||||
Sbjct: 208 tcctcggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_k12.g1 MSMg01no114_k12.g1 CHROMAT_FILE:
MSMg01no114_k12.g1 PHD_FILE: MSMg01no114_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
(581 letters)
>mm_chr5_5648011_5648991
Length = 981
Score = 1100 bits (569), Expect = 0.0
Identities = 578/581 (99%)
Strand = Plus / Plus
Query: 1 aaagtgtgactatgtagacactctaataacagttcaaagactagagactgtatggcagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtgtgactatgtagacactctaataacagttcaaagactagagactgtatggcagtc 260
Query: 61 ccccaggagacagtcggcaagctgtggtgacctctgtatgcccactgctatatataataa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaggagacagttggcaagctgtggtgacctctgtatgcccactgctatatataataa 320
Query: 121 gatatgtaaaagaggcatacatggctgattagaggaaagtcttgttttaaggaggaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatgtaaaagaggcatacatggctgattagaggaaagtcttgttttaaggaggaatta 380
Query: 181 caatgggacaggacagaaaactgtcaccttccgtgttagcttttgatatggtgagtaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgggacaggacagaaaactgtcaccttccgtgttagcttttgatatggtgagtaatt 440
Query: 241 cccaccgcactcattctaagcagctgcaaatgacaggattcaaccaggaggtataagtca 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cccaccgcactcattctaagcagctgcaaatgacaggattcaaccaggatgtataagtca 500
Query: 301 tgataaggagatggaagggaaagagagctgtgctggaaagcccttcatggggtccagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgataaggagatggaagggaaagagagctgtgctggaaagcccttcatggggtccagaag 560
Query: 361 cctagagcttggaagaatccagcaccgaggaggacaagaaccaatcagaagtgatccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctagagcttggaagaatccagcaccgaggaggacaagaaccaatcagaagtgatccatg 620
Query: 421 attcccctcaggtccgacctataatagagatgaagggaaaatccacaacacattggtttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcccctcaggtccgacctataatagagatgaagggaaaatccacaacacattggtttt 680
Query: 481 ccttaggtttagagagttggtagcaagcagctctacttctgaatgcctttttaataggct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttaggtttagagagttggtagcaagcagctctacttctgaatgcctttttaataggct 740
Query: 541 ggctttagaagttgtataactttacaaagtgataaagtatc 581
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 ggctttagaagttgtataactttacaaagtgatgaagtatc 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|