BAC Information

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BAC

Clone NameMSMg01-114K12
Chromosome5 (Build37)
Map Location 5,648,211 - 5,753,605
singlet/doubletdoublet
Overlap geneA330021E22Rik, Steap2, Steap1
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705
Downstream geneLOC727711, LOC546854, LOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K12.T7 (MSMg01no114_k12.b1)MSMg01-114K12.TJ (MSMg01no114_k12.g1)
ACCAG326483AG326484
length706709
length of high quality
(start - end)
428 (63 - 490)581 (75 - 655)
definitionCHROMAT_FILE: MSMg01no114_k12.b1 PHD_FILE: MSMg01no114_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005CHROMAT_FILE: MSMg01no114_k12.g1 PHD_FILE: MSMg01no114_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,753,178 - 5,753,605)(5,648,211 - 5,648,791)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATCTATCACAATCCTTACCTCTTTATTTCATTCACATAAATGGTATG
TATTCATTAAAGGCAGGAAGCAAATATTTAATTTTGGTAATTTCAAAGTT
TACACTTCCTAGCTAAACAGCCTTGAACTGTGACGAGTTCTGAACTCAGT
CATTGCTGTCCATCTCAATTTACATTTTCTTCTTTCTTCTAGTCCCTGAA
AAACACGTGCTCCGGCTTCTGCTCAAAGATCAGCCTTGTGCAGTACAAGG
CTTTATCTCACCTTCATTCACCTTAATTGGTCTCTTTTCCTACATCTTAA
ATGCCTGTCCCATTGCGTTCCTATCCTTATGTCTGTTAGTCCAGAGCTGC
CCCAACTATCTCCTTTCCCTTTTCCTACCCTTTCTTATTTACTAGAAGAC
CATGACTATTCCCTCTGCCCTTCCCCAGTTCTTCCTCGGTGCACAGCATC
AGTCGGGATTTCCATCAAAGTAGGGGAAGGGAAGTTGCAGAACCAGACTC
GCCTCCATTTCCTCTTCTCTTTAACAAACGTCTGCTCTGTGTCTGTCCAT
AGCCCCCGCCCTGAGTTCGTTCCCCTGTTATTTACAAATACATACGTATA
CGATCGTTGGCTGCTATCCCCAAATGATGCATATGGATTTCCATCATTAT
GCCGAA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGTGTGACTATGTAGACACTCTAA
TAACAGTTCAAAGACTAGAGACTGTATGGCAGTCCCCCAGGAGACAGTCG
GCAAGCTGTGGTGACCTCTGTATGCCCACTGCTATATATAATAAGATATG
TAAAAGAGGCATACATGGCTGATTAGAGGAAAGTCTTGTTTTAAGGAGGA
ATTACAATGGGACAGGACAGAAAACTGTCACCTTCCGTGTTAGCTTTTGA
TATGGTGAGTAATTCCCACCGCACTCATTCTAAGCAGCTGCAAATGACAG
GATTCAACCAGGAGGTATAAGTCATGATAAGGAGATGGAAGGGAAAGAGA
GCTGTGCTGGAAAGCCCTTCATGGGGTCCAGAAGCCTAGAGCTTGGAAGA
ATCCAGCACCGAGGAGGACAAGAACCAATCAGAAGTGATCCATGATTCCC
CTCAGGTCCGACCTATAATAGAGATGAAGGGAAAATCCACAACACATTGG
TTTTCCTTAGGTTTAGAGAGTTGGTAGCAAGCAGCTCTACTTCTGAATGC
CTTTTTAATAGGCTGGCTTTAGAAGTTGTATAACTTTACAAAGTGATAAA
GTATCCCTTCCCAGGAAGCTGTTATGAGACTTTTCCTAGGAGATGTACAC
AGATTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k12.b1 MSMg01no114_k12.b1 CHROMAT_FILE:
MSMg01no114_k12.b1 PHD_FILE: MSMg01no114_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
         (428 letters)



>mm_chr5_5752978_5753805
          Length = 828

 Score =  804 bits (416), Expect = 0.0
 Identities = 425/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccttacctctttatttcattcacataaatggtatgtattcattaaaggcaggaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatccttacctctttatttcattcacataaatggtatgtattcattaaaggcaggaagca 569

                                                                       
Query: 61  aatatttaattttggtaatttcaaagtttacacttcctagctaaacagccttgaactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatatttaattttggtaatttcaaagtttacacttcctagctaaacagccttgaactgtg 509

                                                                       
Query: 121 acgagttctgaactcagtcattgctgtccatctcaatttacattttcttctttcttctag 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acaagttctgaactcagtcattgctgtccatctcaatttacattttcttctttcttctag 449

                                                                       
Query: 181 tccctgaaaaacacgtgctccggcttctgctcaaagatcagccttgtgcagtacaaggct 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccctgaaaaacacatgctccggcttctgctcaaagatcagccttgtgcagtacaaggct 389

                                                                       
Query: 241 ttatctcaccttcattcaccttaattggtctcttttcctacatcttaaatgcctgtccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttatctcaccttcattcaccttaattggtctcttttcctacatcttaaatgcctgtccca 329

                                                                       
Query: 301 ttgcgttcctatccttatgtctgttagtccagagctgccccaactatctcctttcccttt 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttgtgttcctatccttatgtctgttagtccagagctgccccaactatctcctttcccttt 269

                                                                       
Query: 361 tcctaccctttcttatttactagaagaccatgactattccctctgcccttccccagttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcctaccctttcttatttactagaagaccatgactattccctctgcccttccccagttct 209

                   
Query: 421 tcctcggt 428
           ||||||||
Sbjct: 208 tcctcggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no114_k12.g1 MSMg01no114_k12.g1 CHROMAT_FILE:
MSMg01no114_k12.g1 PHD_FILE: MSMg01no114_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
         (581 letters)



>mm_chr5_5648011_5648991
          Length = 981

 Score = 1100 bits (569), Expect = 0.0
 Identities = 578/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtgtgactatgtagacactctaataacagttcaaagactagagactgtatggcagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtgtgactatgtagacactctaataacagttcaaagactagagactgtatggcagtc 260

                                                                       
Query: 61  ccccaggagacagtcggcaagctgtggtgacctctgtatgcccactgctatatataataa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaggagacagttggcaagctgtggtgacctctgtatgcccactgctatatataataa 320

                                                                       
Query: 121 gatatgtaaaagaggcatacatggctgattagaggaaagtcttgttttaaggaggaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatatgtaaaagaggcatacatggctgattagaggaaagtcttgttttaaggaggaatta 380

                                                                       
Query: 181 caatgggacaggacagaaaactgtcaccttccgtgttagcttttgatatggtgagtaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgggacaggacagaaaactgtcaccttccgtgttagcttttgatatggtgagtaatt 440

                                                                       
Query: 241 cccaccgcactcattctaagcagctgcaaatgacaggattcaaccaggaggtataagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 cccaccgcactcattctaagcagctgcaaatgacaggattcaaccaggatgtataagtca 500

                                                                       
Query: 301 tgataaggagatggaagggaaagagagctgtgctggaaagcccttcatggggtccagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgataaggagatggaagggaaagagagctgtgctggaaagcccttcatggggtccagaag 560

                                                                       
Query: 361 cctagagcttggaagaatccagcaccgaggaggacaagaaccaatcagaagtgatccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctagagcttggaagaatccagcaccgaggaggacaagaaccaatcagaagtgatccatg 620

                                                                       
Query: 421 attcccctcaggtccgacctataatagagatgaagggaaaatccacaacacattggtttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcccctcaggtccgacctataatagagatgaagggaaaatccacaacacattggtttt 680

                                                                       
Query: 481 ccttaggtttagagagttggtagcaagcagctctacttctgaatgcctttttaataggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttaggtttagagagttggtagcaagcagctctacttctgaatgcctttttaataggct 740

                                                    
Query: 541 ggctttagaagttgtataactttacaaagtgataaagtatc 581
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 ggctttagaagttgtataactttacaaagtgatgaagtatc 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)