BAC Information

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BAC

Clone NameMSMg01-114K14
Chromosome5 (Build37)
Map Location 86,842,607 - 86,842,757
singlet/doubletsinglet
Overlap geneTmprss11a
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream gene9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K14.T7 (MSMg01no114_k14.b1)MSMg01-114K14.TJ (MSMg01no114_k14.g1)
ACCAG326487AG326488
length7241,365
length of high quality
(start - end)
153 (51 - 203)---
definitionCHROMAT_FILE: MSMg01no114_k14.b1 PHD_FILE: MSMg01no114_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:23 2005CHROMAT_FILE: MSMg01no114_k14.g1 PHD_FILE: MSMg01no114_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTACTATATTCAGAGGATCCGCGGAATTCTTTTGATATTACCCCCTTGT
AAATATCAAAGAGGTAAATCTACTCGGTGAAATGATGAGACTTTTGGTAG
CATGGGGTGACAAAAGGCCCTGCCCACAAATCCACAAATGACACAGAATG
AACAAGTGCTAGGGTGGGGGAGGAAAGAAAAAGAACAAAAGTTTGTAACA
CCCCGGCCAGGCCAGAGTGGGATCTAATCCATAGCTAACCTCTGTTGTCA
AGAGTGTGGAAGGACACCGCTATAATTTACGGAAGAGACGGGAAGAAGTG
AGCGGAAGCTCCCCAGAAGGCTTGCAGCAGATGGCTTATGATTATTCCCA
CACCCTGCGCAAAGCATTCGTCGGACCCGAGGACTCCCTGGAATTGTACT
CAACGAACCATAATACAGCCCCTACTCATACACAAAGTCGTTGCACAACA
GTGGTCCAAGTGCTGCTACACCAGGTATGCCCCCCTCGGGCACCCGATCA
CGCCCTCTTACAGCACCTGATACTACACCATTCCAACCATCCATGCTCTT
TTACCCTTTTAATCCGCCCATTTTCTTCTTTGCCCATTCGAAGGTTACTG
TGTCCCTCACCCAGCACCTGATGGCCTACATTTTCCCAAGCCCCACCCTG
GTTCTCCTCCCCGTTTCCCTGCCCCCTGGTCCTGCTCGTCTTCACTTCAG
GCCCCCCTTTTTCTCTCTCCCCCC
CGGGTCGGCGTGCACTTTCTGCCCGTATTTGGGAACCCGCGACTAAAAGC
TTCCCCCGCACTCACAGGGTGGACTCTCGGACTAGTAAACGAGGTGAATT
GTGCGGCGCTACGCCCCAGATTTTCGAGTCGCCCGGATTGAGCACAAAAC
GCCCGGACGTCTAGGAACCTTGTATCCTCACTCACGGTGCAAGAACGCGG
GAGAGGGAGAATATAAATAAAATTCGTACAATACATCGGGTGTGCACGAG
ACCAGATATGTGTGGGCGAACACAATACTTGTTTCGAGCACCATATTAAC
AATTGATGGTATATCGAAACCGCGACATTGTTTATTCATAAATCGGTGTG
CGCGCATAATATCTCGAGTCCGAATTAACGCGGATGGTATAGCAACGCGA
GGCAGCGCGCCCGTAACATTTGTGAATTCGCCCGCAGGGTATTGGAGACG
ACCCACACGCGGGGCGAAACAAGAGGTCGATAACACGGTAGGAAAAACGT
AGAAATACCGGGGCGACAAACATGGGTGGACGTGTACATATGGTCGAAGG
GCAGATGGACCTTGGTGGGACCATCGGAGCACAAGCACAATATACCAATA
TTACACGGGAGAGTAAATAATGGTAGCCAAGTGGGCGAAGTCATACAATA
TATATCGGGAAGATGTTATTATATGAGGCGTAATATAGTGTGGACAGACA
GGAGGATTAAGTCGACGGCACTCTATCTCCCGCGTATCGCAATGTGAGCA
CTATACGGTGGCTTAGATTAGTGTAACCGACGACTTGCGAACCGGTAGGA
GTGAGGAATGTTATAACTGGCCTCTGGATAAATCGGACAACGGCGCGCGG
CCGAGTATACACACGTATGATGGTAGTGGTAAATGGCCACCAAATGAGAC
GCGCCTCGACTCAGCGTACCCGCCTGTCCTGACGATAAATCAATATCGCG
ACGCATCAATAATACTGATATAGCCACGCGTGTGCGTCACGACTATATAC
AAATACCAACAGCGCGGCGAGTGACAAAACAAATATAACGAGGGCGGCTA
TACGTGTGATAACAGCGCACAGAAACATCATGACATTCTATATAGAGCTA
GCGCGGAGGTCAGCGCCGTCGGTTGTGTAAAGAATAAATACAGACGGGTC
GTCGGTCGTATATTCGTCGCGACCGAGTATGTATTGGCGTACACTCGCAC
GTACATACCGAGCGGATACAAATCTCGGTATTGTCCACATCCACCATCGA
TACGAGATGACACGACACTAACACGCAGTGTTGTTTCACGACGCACCGAG
CTGTGTCGATCGGCACTCATACTATCGTAGTGTATATGTCGCGTGAGCTG
TAGCGCGTGTGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k14.b1 MSMg01no114_k14.b1 CHROMAT_FILE:
MSMg01no114_k14.b1 PHD_FILE: MSMg01no114_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:23 2005
         (153 letters)



>mm_chr5_86842407_86842959
          Length = 553

 Score =  284 bits (147), Expect = 1e-81
 Identities = 150/151 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatcaaagaggtaaatctactcggtgaaatgatgagacttttggtagcatggggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaatatcaaagaggtaaatctactcggtgaaatgatgagacttttggtagcatggggtga 292

                                                                       
Query: 61  caaaaggccctgcccacaaatccacaaatgacacagaatgaacaagtgctagggtggggg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 291 caaaaggccctgcccacaaatccacaaatgacacagaatgaacaagtgttagggtggggg 232

                                          
Query: 121 aggaaagaaaaagaacaaaagtttgtaacac 151
           |||||||||||||||||||||||||||||||
Sbjct: 231 aggaaagaaaaagaacaaaagtttgtaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)