Query= MSMg01no114_n11.b1 MSMg01no114_n11.b1 CHROMAT_FILE:
MSMg01no114_n11.b1 PHD_FILE: MSMg01no114_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:38 2005
(380 letters)
>mm_chr5_71591895_71592674
Length = 780
Score = 681 bits (352), Expect = 0.0
Identities = 373/380 (98%)
Strand = Plus / Minus
Query: 1 catgttagaggctatcaagctcaaagatactagaaccagaaaacaaatccaggtatactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 catgttagaggctatcaagctcaaagatactagaaccagaaaacaaatccaggtatactt 678
Query: 61 gattcctacattggtaacataaaatattgtcccacaggtgcctttcttttagtcaggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gattcctacattggtaacataaaatattgtcccacaggtgcctttcttttagtcaggtat 618
Query: 121 aggcaatttcatgccaaaaaattaaatatatttaaatgtaaggaaagacaaatgaaatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggcaatttcatgccaaaaaattaaatatatttaaatgtaaggaaagacaaatgaaatgc 558
Query: 181 ccccggtctaaattataatgattcataactgaagaaaactggaagacagccaatggaatt 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcctggtctaaattataatgattcataactgaagaaaactggaagacagccaatggaatt 498
Query: 241 taaccttaccctataaagagctctaattctagccaacaaagcgaaaccgagcattaataa 300
||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct: 497 taaccttaccctagaaagagctctgattctagccaacaaaacgaaaccaagcattaataa 438
Query: 301 tgcaaggtgacatgcaaaggaagaatcaacatactaacgtgattcattcaacctcattcc 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 437 tgcaaggtgacatgcaaaggaagaatcaacgtactaacgtgattcattcaacctcattcc 378
Query: 361 ggaagacacgttccaccagg 380
||||||||||||||||||||
Sbjct: 377 ggaagacacgttccaccagg 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_n11.g1 MSMg01no114_n11.g1 CHROMAT_FILE:
MSMg01no114_n11.g1 PHD_FILE: MSMg01no114_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:38 2005
(563 letters)
>mm_chr5_71513845_71514807
Length = 963
Score = 1002 bits (518), Expect = 0.0
Identities = 553/566 (97%), Gaps = 3/566 (0%)
Strand = Plus / Plus
Query: 1 agttcaatttcttgtccatctgcagggcaccagaggccctctttggctcctatggtcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agttcaatttcttgtccatctgcagggcaccagaggccctctttggctcctatggtcacc 257
Query: 61 caaatacacaaacgtggcatgcaccctaccttccacatacattaaaaatattaattgatt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caaatacacaaacgtggaatgcaccctaccttccacatacattaaaaatattaattgatt 317
Query: 121 aggctttttt---ctttttatccttaataaaaatataattgcatcctttccttgcttcct 177
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggcttttttttcctttttatccttaataaaaatataattgcatcctttccttgcttcct 377
Query: 178 ttcctccctaaaacaatgggaactgagcatccacaggcctcccctactgcagctgcactg 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 378 ttcctccctaaaacaatgggaactgagcatccataggcctcccctactgcagctgcactg 437
Query: 238 aggcatcgatagactgtatccatatctaaaaccatgagatagattattcttgtcagactt 297
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 438 aggcatcgatagactgtatccacgtctaaaaccatgtgatagattattcttgtcagactt 497
Query: 298 taggttgctccttgccatgtagtaagccaaagtaataagaaaagtaactattgttcatgc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 taggttgctccttgccatgtagtaagccaaagtaataagaaaagtaactattgtttatgc 557
Query: 358 ccagtgcattgttttcttgagcacttgccttaatcatttcctattagaggaattttgttg 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 ccagtgcattgttttcttgagcacttgccttaatcatttgctattagaggaattttgttg 617
Query: 418 aggatttgtaacaaaatcactatatgtgtccctccatctcaaatacgaaggaagccaaga 477
||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 618 aggatttgtaacaaaataactatatgtgcccctccatctcaaatatgaaggaagccaaga 677
Query: 478 aaccaaagaaatgaccccacacaggtctagataggtgaggcagtgagttgctggatgtta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaccaaagaaatgaccccacacaggtctagataggtgaggcagtgagttgctggatgtta 737
Query: 538 tttgcattaatgtggataacactcag 563
||||||||||||||||||||||||||
Sbjct: 738 tttgcattaatgtggataacactcag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
