BAC Information

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BAC

Clone NameMSMg01-114P21
Chromosome5 (Build37)
Map Location 86,555,419 - 86,555,955
singlet/doubletsinglet
Overlap geneUbe1l2
Upstream geneCenpc1, LOC100039521, AI586015
Downstream geneGnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114P21.T7 (MSMg01no114_p21.b1)MSMg01-114P21.TJ (MSMg01no114_p21.g1)
ACCAG326738AG326739
length721740
length of high quality
(start - end)
508 (40 - 547)537 (76 - 612)
definitionCHROMAT_FILE: MSMg01no114_p21.b1 PHD_FILE: MSMg01no114_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:49 2005CHROMAT_FILE: MSMg01no114_p21.g1 PHD_FILE: MSMg01no114_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTCGGACAACTGGATCCTTCTACGGCAAAGCTTTTATTGCTTCAACATAA
GGAAGACCCCAAACCCAGAAAATGGCGCTGCTTATATAGCCCACAGCGTG
ACATTTCAGCACCTGATGTGGCATGACAGCACCTGATTAGTTGCTCGCCC
ATCACCCCATTACTACACCCCAAGATGGGCTTGAATTCACTCTTGCACTT
GCGAATAAGGCTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGGGCCATCT
TATAATGGTGATTGCTCATGGCACGGCTCTCCACATCTCCCCCCCTTTTA
TTTTATTAAAATTTGAGGCTGGACTAGGCCTCTGCAGTCATGTCCATCTG
CTGTGGCTCCTGTCTTAGGTCATTCCTCCAATGTCACAGCCTTTCCTGTC
AGAGGGTAACTCTATCGCCACAGGGTCTCATGTCTTACGTTGGTCTGTAC
ATGAGGAAAGTTGCTCGTCTCTGGATACCGCAGTACTGTGTGACAGTAAC
TGCCAAATGACCTAGGGCGAACTCTATAAAAGAGGCCAGCTGTCAAGGCA
CTCTGGTGGAGTCAGCTTGACAAAGTGAAAGCGGGAAAGCTGGTTCATGA
AGCAAAGAGTTTCACGGGAACTCCCTTCCCGGGGGCCCTGCATTTTCTCC
CTAATCTATATAACCCATAAA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGCTGAGAATGGGATTTGTTA
TAAACAACAGTTTAATAACCACTAGTTATGTGAATAGACTTCTATCTTAC
CTTGTTGGAAGGCTTGAATTCCTCAATTTTAACTTCTGAAAGAATGTCCA
TGAGGCTATTCACTGATAAGTCCTGTTTCATAAAATAAGTTAATTTATCA
ACACATTTCTTCATTAAACACATTAAGTTCATACACTGAGAAGCAAGAAA
CTATAATAGCCCAAGCTGAACTAGATGAACCCGCATCCACATTAACTATT
AGGAAGCTCCTATGAAAAACTGAGACATACTGCTTTTGAGATCGGTTTAG
ACTTGCAGCACAAGACTGAACACTATTAGTTTTTCCTAGACCTTTATATG
TTTTATTTCCAAGAAAGATTAATCTATAACATGCATATGTACACTAAATA
CAGATTCAGATTTAGGGCATATGTCTATAATCTCAGCAGTTAAGAGGCTG
AAATGGACGAATCATGAGTACACTTCCTGGGTTTATATATCTACTTAGTA
AAAACCTATCTTANAAAAGAAAACAACAGAAACTAAGACCTTTTTCTTTT
TATATTTCTCTAATCAGTTTACTTGAAGGCAGAATTTACTTAACTCTAAA
TATACATTTAAGGAGAAAGCTAAGCTATGCACATGAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_p21.g1 MSMg01no114_p21.g1 CHROMAT_FILE:
MSMg01no114_p21.g1 PHD_FILE: MSMg01no114_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:49 2005
         (537 letters)



>mm_chr5_86555219_86556155
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcaggctgagaatgggatttgttataaacaacagtttaataaccactagttatgtgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaggctgagaatgggatttgttataaacaacagtttaataaccactagttatgtgaat 260

                                                                       
Query: 61  agacttctatcttaccttgttggaaggcttgaattcctcaattttaacttctgaaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacttctatcttaccttgttggaaggcttgaattcctcaattttaacttctgaaagaat 320

                                                                       
Query: 121 gtccatgaggctattcactgataagtcctgtttcataaaataagttaatttatcaacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccatgaggctattcactgataagtcctgtttcataaaataagttaatttatcaacaca 380

                                                                       
Query: 181 tttcttcattaaacacattaagttcatacactgagaagcaagaaactataatagcccaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcttcattaaacacattaagttcatacactgagaagcaagaaactataatagcccaag 440

                                                                       
Query: 241 ctgaactagatgaacccgcatccacattaactattaggaagctcctatgaaaaactgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaactagatgaacccgcatccacattaactattaggaagctcctatgaaaaactgaga 500

                                                                       
Query: 301 catactgcttttgagatcggtttagacttgcagcacaagactgaacactattagtttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catactgcttttgagatcggtttagacttgcagcacaagactgaacactattagtttttc 560

                                                                       
Query: 361 ctagacctttatatgttttatttccaagaaagattaatctataacatgcatatgtacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagacctttatatgttttatttccaagaaagattaatctataacatgcatatgtacact 620

                                                                       
Query: 421 aaatacagattcagatttagggcatatgtctataatctcagcagttaagaggctgaaatg 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 aaatacagattcagatttagggcatatgtctataatcccagcagttaagaggctgaaatg 680

                                                                    
Query: 481 gacgaatcatgagtacacttcctgggtttatatatctacttagtaaaaacctatctt 537
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacgaatcatgagtacacttactgggtttatatatctacttagtaaaaacctatctt 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)