BAC Information

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BAC

Clone NameMSMg01-115F23
Chromosome5 (Build37)
Map Location 4,157,893 - 4,158,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51
Downstream geneENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115F23.T7 (MSMg01no115_f23.b1)MSMg01-115F23.TJ (MSMg01no115_f23.g1)
ACCAG327020AG327021
length750740
length of high quality
(start - end)
359 (45 - 403)324 (79 - 402)
definitionCHROMAT_FILE: MSMg01no115_f23.b1 PHD_FILE: MSMg01no115_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:18 2005CHROMAT_FILE: MSMg01no115_f23.g1 PHD_FILE: MSMg01no115_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTCTAGCTCTATATTCCATTTTTTAATGTTTTTTTTTAAATTT
CTAGAGTCCAGTTTCTTGAGCTCTTTGTATATATTAGATATTAGTCCCCT
ATATGATTTAGGGTTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCCTATTGACAGTGTCTTTGGCCTGACAGAAGCTTTGCAATTCTATG
AGGTCCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCT
GTTTAGGAATTTTCCCCCTGTGCCCATATCTTTGAGGCTTTTCCCCATTT
TCTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCTTTGATC
CACTTAGACTTGCCCCCCGTACAAGGAGATAAGAATGCATCCATTAGCAT
TCTTCTACCTGCTAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGA
TGCCTCTTTTCCCCTGGCTGGCCTTCACCTCTTCGCCCTATTACCACGCC
CCTCCCCCCTGCCCACCCCTATTCCTGTCTTCTTTTTTTTTATTCCCCCT
CCCCCTTCCTTCCTTCTTCTCTCCCTCATACTCTTTACCCCCCTTCCTCC
TCCTTTTTTTTCCCTCCCCCTCTTTCCCACCCCTTTTCCTCTCCCTTCTT
TTCCCGCCTTTTTTTCCCTTTTTTTCTTCCCCCCTCCTTCCCCCCCCCTC

NTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCTTGTGCTTGCAAGGAA
AGTACTGACCACTTAATGTGGTTTTAATTTACAATCTTCCGATGGCCAAT
GATGCTGCACAATTTTTTATATTTATTGGACATGGACATTTCATTAACAC
ATTTATTGGTTGGGTTGCTTAACTTCTTATTTAGTTTCTTTAGTTCATTG
TATTTTCTAGTTATGAGTCCTCTATCCAATGTACAGCTAGAAACTATTTT
AAGATTATTTTTAAATGTACTTATTTATTTGCCAGGGTGGGGAGCGCATG
CCATTATGCAGAGGGGGAGGTCAATAGATAACTTTGTGGGGTTGGTTTTC
GTTCATCTTCTTTATGCCCCCCCCGTTGTTAACTTTGCGTTTCTCACCAC
CATCTTCTGCATTTCCATTCCCCAGCATCTTATGTATTTCCTCTCTATCC
CTCACTTCTTTCTTTCCCCCATTCCCTTTTCTTTTCTTTTCCCTTTTCTC
ATTATTCCCCCTTCCATCCTCCGTCTCCCTTCTCTTTTATCATTTCCCCC
CTCCCCTCCCTTCCTTCCTCTTACCCACCCCTCTCTCTTCTTTTCCCCAC
TTTATTTCTCCTCTTCTCCCCTCCCTCCCTTCCCCTCTTTTTCCCTCTAC
CACACTTTCCCCTCACACTCCTTCCTTTTATTTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_f23.g1 MSMg01no115_f23.g1 CHROMAT_FILE:
MSMg01no115_f23.g1 PHD_FILE: MSMg01no115_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:18 2005
         (324 letters)



>mm_chr5_4157693_4158415
          Length = 723

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%), Gaps = 1/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccttgtgcttgcaaggaaagtactgaccacttaatgtggttttaatttacaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccttgtgcttgcaaggaaagtactgaccacttaatgtggttttaatttacaatctt 260

                                                                       
Query: 61  ccgatggccaatgatgctgcacaattttttatatttattggacatggacatttcattaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccgatggccaatgatgctgcacaattttttatatttattggacatggacatttcattaac 320

                                                                       
Query: 121 acatttattggttgggttgcttaacttcttatttagtttctttagttcattgtattttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 acatttattggttgggttgcttaacttcttatttagtttctttagttcattgtattt-ct 379

                                                                       
Query: 181 agttatgagtcctctatccaatgtacagctagaaactattttaagattatttttaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agttatgagtcctctatccaatgtacagctagaaactattttaagattatttttaaatgt 439

                                                                       
Query: 241 acttatttatttgccagggtggggagcgcatgccattatgcagagggggaggtcaataga 300
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 440 acttatttatttgccagggtggggagcgcgtgccattatgcagagggggaggccaataga 499

                                  
Query: 301 taactttgtggggttggttttcg 323
           |||||||||||||||||||||||
Sbjct: 500 taactttgtggggttggttttcg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space:   224910
Effective search space used:   224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)