Query= MSMg01no116_a21.b1 MSMg01no116_a21.b1 CHROMAT_FILE:
MSMg01no116_a21.b1 PHD_FILE: MSMg01no116_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:11 2005
(322 letters)
>mm_chr5_55388918_55389640
Length = 723
Score = 555 bits (287), Expect = e-162
Identities = 311/325 (95%), Gaps = 12/325 (3%)
Strand = Plus / Minus
Query: 6 gaattctatatat-ttcattactgacacccttgcattaaaatttcatgtttataattatc 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaattctatatataatcattactgacacccttgcattaaaatttcatgtttataattatc 378
Query: 65 tatgtcattaacatttctattctttttttggttgaaaactaaaatatattgtttgtgaga 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatgtcattaagatttctattctttttttggttgaaaactaaaatatattgtttgtgaga 318
Query: 125 aaaaaatgtgtcctacctgttttttatatgaggtatccagataccatatgtttctcagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaaaatgtgtcctacctgttttttatatgaggtatccagataccatatgtttctcagtt 258
Query: 185 ggtgttttcactgcttgaattaaatacagtcacatagatgatcaggtaaggt-------- 236
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtgttttcactgcttgaattaaatacagtcacatagatgatcaggtaaggtgttgtgtt 198
Query: 237 --acaaatgccaaagtacttatagaagtcatgttttattttttaatatataactattgga 294
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tga-aaatgccaaagtacttatagaagtcatgttttattttttaatatataactattgga 139
Query: 295 gtctttgagttttgagatgtgttta 319
|||||||||||||||||||||||||
Sbjct: 138 gtctttgagttttgagatgtgttta 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space: 223482
Effective search space used: 223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_a21.g1 MSMg01no116_a21.g1 CHROMAT_FILE:
MSMg01no116_a21.g1 PHD_FILE: MSMg01no116_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:11 2005
(311 letters)
>mm_chr5_55225709_55226419
Length = 711
Score = 565 bits (292), Expect = e-165
Identities = 304/308 (98%), Gaps = 1/308 (0%)
Strand = Plus / Plus
Query: 1 tttcttgatgcactaggtagtacagttttcttggaggatatttttgaggggagaggtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttgatgcactaggtagtacagttttcttggaggatatttttgaggggagaggtaaa 260
Query: 61 taaatactgtagagttgatagacaaaggcaaagtccagcttatctttttgttttactggt 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatacagtagagttgatagacaaaggcaaagtccagcttatctttttgttttactggt 320
Query: 121 taaatttgttctttgacaatttcatacatgtatattatgcattcagcttactcttacacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatttgttctttgacaatttcatacatgtatattatgcattcagcttactcttacacc 380
Query: 181 ctgtgctctcatctccctcccatccctgtcatcttccatatcctacccacaggtcctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgctctcatctccctcccatccctgtcatcttccatatcctacccacaggtcctttc 440
Query: 241 cccaaattcatgttctctctctctctctctctctctctctctctctctctctctctctct 300
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 441 cccaaattcatgttctctctctctctctccctctctctctccctct-tctctctctctct 499
Query: 301 ctctctct 308
||||||||
Sbjct: 500 ctctctct 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
