Query= MSMg01no116_d16.b1 MSMg01no116_d16.b1 CHROMAT_FILE:
MSMg01no116_d16.b1 PHD_FILE: MSMg01no116_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:25 2005
(544 letters)
>mm_chr5_122385730_122386674
Length = 945
Score = 975 bits (504), Expect = 0.0
Identities = 533/546 (97%), Gaps = 7/546 (1%)
Strand = Plus / Minus
Query: 3 gcggaattctttctt----ttcctgcctccaacgccacagggtgctctcagcacccagag 58
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcggaattctttcttagaa---ctgcctccaacgccacagggtgctctcagcacccagag 689
Query: 59 cccgggtaggacagaagggccacccaaatcccattctgactgacaccctgtgaccctgag 118
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cccgggcaggagagaagggccacccaaatcccattctgactgacaccctgtgaccctgag 629
Query: 119 cctggaagcacctcctctgagttcccactgtcaccctcggtaatacaggaatgtgacaga 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 628 cctggaagcacctcctctgagttcccactgtcaccctccgtaatacaggaatgtgacaga 569
Query: 179 cagagacctaggagtgctgctgtaatgttaattactgtcatggtggcccagcgtaggacg 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 568 cagagacctaggagtgctgctgtaatgttaattactgtcatggtggcccagcgtgggacg 509
Query: 239 agacgaggcaggttctagaaagaaatcttatacacacttcataaacctgagctgatctct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agacgaggcaggttctagaaagaaatcttatacacacttcataaacctgagctgatctct 449
Query: 299 gagcagtgctgacccccaccttctgacttcctgtgagctgttttgaggtgtaacttaggc 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 448 gagcagtgctgacccccaccttctgacttcctgcgagctgttttgaggtgtaacttaggc 389
Query: 359 taaactgaccttactatgtgcaggcagcctgacatatgcatctgggtgtgtatggagtta 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 388 taaactgaccttactatgtgcaggcagcctgacatatgcgtctgggtgtgtatggagtta 329
Query: 419 caaggcctctgtgctatatgctttagaaatacccatcacacaaaaggtcctttgtattga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaggcctctgtgctatatgctttagaaatacccatcacacaaaaggtcctttgtattga 269
Query: 479 tttatgatccctcctgatctagcccagcccagccccgctgcaggctccttccggcctcaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tttatgatccctcctgatctagcccagcccagccccgctgcaggctccttccggcctcaa 209
Query: 539 gggatt 544
||||||
Sbjct: 208 gggatt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_d16.g1 MSMg01no116_d16.g1 CHROMAT_FILE:
MSMg01no116_d16.g1 PHD_FILE: MSMg01no116_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:26 2005
(283 letters)
>mm_chr5_122241515_122242197
Length = 683
Score = 476 bits (246), Expect = e-139
Identities = 272/282 (96%), Gaps = 5/282 (1%)
Strand = Plus / Plus
Query: 2 tttctctgtcctgatatttattattttttccagccttgatttgggctcaggtttgttgtt 61
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||
Sbjct: 207 tttctctgtcctgatacttattattttttccagccttgatttgggcttaggtt-gtcgtc 265
Query: 62 actcttctgatatcttcaggtacagcattgttacttatttgagatcttatcaaattcttt 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 266 actcttctgatatcttcaggtacagcattgttacttatt-gagatcttatcaaattcttt 324
Query: 122 tttttttttataaatttaactgaatttaattattttaatttttgtttaattaattaacaa 181
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttt---ataaatttaactgaatttaattattttaatttttgtttaattaattaacaa 381
Query: 182 ttgggcattacatttcttctttaaattaaagttcaggtagcactggcatcaagagtcggt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgggcattacatttcttctttaaattaaagttcaggtagcactggcatcaagagtcggt 441
Query: 242 ctctaggagtggatcacacttattttgttgagctcctgggca 283
|||||||||||||||| |||||||||||||||||||||||||
Sbjct: 442 ctctaggagtggatcatacttattttgttgagctcctgggca 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
