Query= MSMg01no116_f07.b1 MSMg01no116_f07.b1 CHROMAT_FILE:
MSMg01no116_f07.b1 PHD_FILE: MSMg01no116_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:33 2005
(231 letters)
>mm_chr5_35665298_35665928
Length = 631
Score = 362 bits (187), Expect = e-104
Identities = 214/231 (92%), Gaps = 13/231 (5%)
Strand = Plus / Minus
Query: 1 gctgctgtcccagacctccggcacacagttcagagcctgctctgagccagcactcctggg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gctgctgtcccagacctccagcacacagttcagagcctgctctgagccagcactcctggg 332
Query: 61 cctctaggtcctttttgtcagggaatgctgtccagctgcctttgtcaggagaccttggag 120
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 331 cctctaggtcctttttgtcagggaacactgtccagctgcctttatcaggagaccttggag 272
Query: 121 ctttgagcatagctctcagtactgccattggttgaggtccccctagtggttgttgatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctttgagcatagctctcagtactgccattggttgaggtccccctagtggttgttgatgtg 212
Query: 181 ggcagggtcagccagctactccaggtggtcaggttttgagataactagtct 231
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 211 ggcagggt-------------caggtggtcaggttttgagataactagtct 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no116_f07.g1 MSMg01no116_f07.g1 CHROMAT_FILE:
MSMg01no116_f07.g1 PHD_FILE: MSMg01no116_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:33 2005
(288 letters)
>mm_chr5_35553824_35554511
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Plus
Query: 1 caggctagtgagtgaccctgtctcaaaaaagaagggagaaatgcgctgctcctggggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctagtgagtgaccctgtctcaaaaaagaagggagaaatgcgctgctcctggggagg 260
Query: 61 agggacagaaatggagatatggaggaatagaggaggagagaaatgtagaagaggaacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggacagaaatggagatatggaggaatagaggaggagagaaatgtagaagaggaacatg 320
Query: 121 gagaaggagtagaggaagagtgactgggaaacaaatgagcttctgggagggacagccagg 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaggagtagaggaagagtgactgagaaacaaatgagcttctgggagggacagccagg 380
Query: 181 tgggcagggttcatgtactgctcaggcaggtggacaggcaggtggtcagacaggtggata 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggcagggttcatgtactgcttaggcaggtggacaggcaggtggtcagacaggtggata 440
Query: 241 ggcaggttgtcagacagatggtcagacaggtggacaggcaggtggtca 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcaggttgtcagacagatggtcagacaggtggacaggcaggtggtca 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
