Query= MSMg01no116_j01.b1 MSMg01no116_j01.b1 CHROMAT_FILE:
MSMg01no116_j01.b1 PHD_FILE: MSMg01no116_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:51 2005
(639 letters)
>mm_chr5_123982253_123983288
Length = 1036
Score = 1110 bits (574), Expect = 0.0
Identities = 618/634 (97%), Gaps = 5/634 (0%)
Strand = Plus / Plus
Query: 7 ggaattcagggtca-ttcgctacatagggagttggagactagccttggctacagttagta 65
|||||||| ||||| || |||||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 207 ggaattcaaggtcactt-gctacaaagggagttggaggctagccttggctacagtgagta 265
Query: 66 agactcaccccatcttctgctacacacacaggaatgtatgtttagtatgtgtgaagcctg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agactcaccccatcttctgctacacacacaggaatgtatgtttagtatgtgtgaagcctg 325
Query: 126 ggtttaatttcctagaccaataaacaaacaatcaaacaccctcactatgtagcaattaaa 185
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 326 ggtttaatttcctagaccaataaacaaacaaacaaacaccctcgctatgtagcaattaaa 385
Query: 186 aagaatcaggatggggcaccaggacagctcttagaagcccttgctgagcagtaggtgggt 245
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 aagaatcaggatggggcaccaggacagctcttaggagcccttgctgagcagtaggtgggt 445
Query: 246 ttgaggggaggaagaccagactagtgatgagctaacacactgcctatgtaacgtacatac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgaggggaggaagaccagactagtgatgagctaacacactgcctatgtaacgtacatac 505
Query: 306 ttagcagcatcacactagtgatgaatggaaagccaagagaagcgctgcagaccaggaaca 365
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttagca---tcacactagtgatgaatggaaagccaagagaagcgctgcagaccaggaaca 562
Query: 366 cagcccctgagtaactggacgcctacatgcctcctggagggactaaaacctggccacgtg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 cagcccctgagtaactggacgcctacatgcctcctggagggactaaaacctggccacatg 622
Query: 426 ggtgcctctgtgaggaacagggtagctgtggcaggagctgctccccttcctggagcatag 485
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtgcttctgtgaggaacagggtagctgtggcaggagctgctccccttcctggagcatag 682
Query: 486 ctagctggtttgcgtatgctggatgttccgcatgtccccacacttctcccaggggcctgt 545
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 683 ctagctggtttgcgtatgctggatgttcctcatgtccccacacttctcccaggggcctgt 742
Query: 546 gccagcactcacatgacttgtgtttgggctgggcaatgggaggtcccagggacaactaga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gccagcactcacatgacttgtgtttgggctgggcaatgggaggtcccagggacaactaga 802
Query: 606 gaatggagagcagtatggagcttgtcttgtctag 639
|||||||||||||||||| |||||||||||||||
Sbjct: 803 gaatggagagcagtatggggcttgtcttgtctag 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1036
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1026
Effective search space: 645354
Effective search space used: 645354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_j01.g1 MSMg01no116_j01.g1 CHROMAT_FILE:
MSMg01no116_j01.g1 PHD_FILE: MSMg01no116_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:51 2005
(549 letters)
>mm_chr5_124082476_124083419
Length = 944
Score = 1015 bits (525), Expect = 0.0
Identities = 541/549 (98%), Gaps = 5/549 (0%)
Strand = Plus / Minus
Query: 1 ctccctagcctccttatacccagctcacctggggcggtagaaatccgaccacgaataaga 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 ctccctagcctccttatacccagctcacctggggcggtagaaatccgagcacgaataaga 685
Query: 61 agcagttgctggcttttatggccataaaccggcaggagaattgtgactgagggcaaacgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 684 agcagttgctggcttttatggccataaaccggcaggagaattgtgactgagggcaaatgc 625
Query: 121 tgggaaataaaatttcaaatagaagtgtcagaatgccacacagagagccaccaccctatt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggg-----aaatttcaaatagaagtgtcagaatgccacacagagagccaccaccctatt 570
Query: 181 gctttttacttggtgttctctgaatttgacagttccattgtgaccgggaacggacctacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gctttttacttggtgttctctgaatttgacagttccattgtgaccgggaacggacctacc 510
Query: 241 ggtaggctttggtttatttatgctatgatcttgtggcaaagggcttcattgatgttttat 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggtagactttggtttatttatgctatgatcttgtggcaaagggcttcattgatgttttat 450
Query: 301 atattagttgtaagaaattgatggacctctcctccctagagaccggaatataaatgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atattagttgtaagaaattgatggacctctcctccctagagaccggaatataaatgaatt 390
Query: 361 aacgtgtttaatctgagacatttatataactgcaaaggcccacagctgtagtcagttcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aacgtgtttaatctgagacatttatataactgcaaaggcccacagctgtagtcagttcca 330
Query: 421 taatagctagtgactgtgtggtgcctccctccttctttcctcttggacatttatattgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taatagctagtgactgtgtggtgcctccctccttctttcctcttggacatttatattgct 270
Query: 481 gagcatcacaacatgccggggcaaacataggaagcagaggacacttgtcctgtgttttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagcatcacaacatgccggggcaaacataggaagcagaggacacttgtcctgtgttttct 210
Query: 541 gtccctatc 549
|||||||||
Sbjct: 209 gtccctatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 944
Length adjustment: 10
Effective length of query: 539
Effective length of database: 934
Effective search space: 503426
Effective search space used: 503426
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
