TTCTTTNTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAG
AGGATCCGCGGAATTCAGTTCTTCCACTTGCAAGCAAGCAGTGTGAAAAT
TAAAATAAGTACTCTGCCTATTTATCTTAACCACACAGATATTTATTTTT
GTTAACTGAAATTTGACTACTTAATAAGGCTTTTTTTGACAAATAGAGAA
ACATGTAACGTTTAAAATATTTTTCATTGCAACTCAATTTTATATATCCT
ACTCAATTTGTACTGTTATTTTAATATCTAAATTGATATGCATTTGCCAC
TAAGAGAAAAAAAGAGCTAGAACCAGAACTAGTTAAGATTCCTATGTCTG
GGAGTTGTGTCATAGGTATTCTGAACTTTTTGGCTAATATCAACTTATCA
ATTAGTACATAAAATGCATGTCCTTAGGATCTGGGTAATGTCGCTCAGAA
TGGTGTCCTTATTTTTAATAGCCGAATAGTATTGTATTGTATAAATGACC
CACATTTTGTGTCCATTCTTCAGTTGAGGGACATCTGGGTTGTTTGCAAT
TTCTAGCTATTACAAATATGGTTGCTATAAACATCGTGGAGCATATGTCC
TTTTTGTATGGACAATCATTTTTAAGATATATTTCCAGGAGTGGTATAAC
TGTGTCTTCCGGCAGAATTATTTCCAATTTTCTCATGAACCACCAGAC

TTCCTTNNTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTATTTGCTTCATT
CATTTATTTGCTTCATTCATTTTGAAACAAAATGTTCCTTATAATGATTC
TTGCTAACCTTTTCTGGGCATTAACCATCACTTTCTTACATTGTAGAAAT
GTCTACCCTTCTAGATAAACAAGACTAGACAAGATAGACTCTGGTTCAGC
GTAAGCACACAGTCTCTCCTTTTATTTTTAACCTCATGTCATTGCCAAAA
CCACTCCTTTCCCATGACAGATTTTGCTCCTTCCAAGATCTTAGTATAAT
TTCATAACCGCTAACCTGCTTAGGTAACTATGCTCGGTTTTTGGTTCTTA
TTTATTGGCTTCTGTTTGTTTTACCTGCTTATTCCTATCTTCTGGCATTC
TTCATAAATTATATGGACAGAACCTCATCTACTGAAAGTCAGTATTGCTC
CACCTCTTTGAAATACCGCTTTGCTTCTGAGCCTATACGTGATGTTAGTG
AATTCAATGAATATATTATTTATATATCTGCAATAAGATAAATAATTTCT
GCATTTGGAACACGTATATCAGAATTTGAACCATGTCTTCCTGTTGCTTG
GGTAACCAAAATAGGTAATTTCTTTTCTGCCATTTCCAGAGTACT

Query= MSMg01no116_k14.b1 MSMg01no116_k14.b1 CHROMAT_FILE:
MSMg01no116_k14.b1 PHD_FILE: MSMg01no116_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:58 2005
         (586 letters)



>mm_chr5_84673386_84674371
          Length = 986

 Score =  880 bits (455), Expect = 0.0
 Identities = 470/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcagttcttccacttgcaagcaagcagtgtgaaaattaaaataagtactctgccta 67
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcagttctttaacttgcaagcaagcagtgtgaaaattaaaataagtactctgccta 416

                                                                       
Query: 68  tttatcttaaccacacagatatttatttttgttaactgaaatttgactacttaataaggc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tttatcttaaccacacagatatttatttttgttaactgaaatttgactacttaataaggc 356

                                                                       
Query: 128 tttttttgacaaatagagaaacatgtaacgtttaaaatatttttcattgcaactcaattt 187
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 355 tttttttgacaaatagagaaacatgtaacgtttaaaatatttttcatcgcaactcaattt 296

                                                                       
Query: 188 tatatatcctactcaatttgtactgttattttaatatctaaattgatatgcatttgccac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tatatatcctactcaatttgtactgttattttaatatctaaattgatatgcatttgccac 236

                                                                       
Query: 248 taagagaaaaaaagagctagaaccagaactagttaagattcctatgtctgggagttgtgt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 taagagaaaaaaagagctagaaccagaactagttaagattcctatgtctgggagttgtgt 176

                                                                       
Query: 308 cataggtattctgaactttttggctaatatcaacttatcaattagtacataaaatgcatg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cataggtattctgaactttttggctaatatcaacttatcaattagtacataaaatgcatg 116

                                                                       
Query: 368 tccttaggatctgggtaatgtcgctcagaatggtgtccttatttttaatagccgaatagt 427
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 115 tccttaggatctgggtaatgtcgctcagaatgatgtccttatttttaatagccgaatagt 56

                                                                  
Query: 428 attgtattgtataaatgacccacattttgtgtccattcttcagttgagggacatc 482
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  attgtattgtgtaaatgacccacattttgtgtccattcttcagttgagggacatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no116_k14.g1 MSMg01no116_k14.g1 CHROMAT_FILE:
MSMg01no116_k14.g1 PHD_FILE: MSMg01no116_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:59 2005
         (293 letters)



>mm_chr5_84572670_84573362
          Length = 693

 Score =  487 bits (252), Expect = e-142
 Identities = 273/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 14  attcatttatttgcttcattcattttgaaacaaaatgttccttataatgattcttgctaa 73
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 214 attcatttatttgcttcattcgttttgaaacaaaatgttccttataatgattcttgataa 273

                                                                       
Query: 74  ccttttctgggcattaaccatcactttcttacattgtagaaatgtctacccttctagata 133
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 ccttttctgggcattaaccatcactttcttacattgtagaaatgtctagccttctagata 333

                                                                       
Query: 134 aacaagactagacaagatagactctggttcagcgtaagcacacagtctctccttttattt 193
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 334 aacaagactagacaagatagactctggttcagtgtaagcacacagtctctccttttattt 393

                                                                       
Query: 194 ttaacctcatgtcattgccaaaaccactcctttcccatgacagattttgctccttccaag 253
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttaacctcatgtcattgttaaaaccactcctttcccatgacagattttgctccttccaag 453

                                                   
Query: 254 atcttagtataatttcataaccgctaacctgcttaggtaa 293
           |||||||||||||||||||||| |||||||||||||||||
Sbjct: 454 atcttagtataatttcataaccactaacctgcttaggtaa 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)