Query= MSMg01no116_p13.b1 MSMg01no116_p13.b1 CHROMAT_FILE:
MSMg01no116_p13.b1 PHD_FILE: MSMg01no116_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:22 2005
(642 letters)
>mm_chr5_96597843_96598883
Length = 1041
Score = 1170 bits (605), Expect = 0.0
Identities = 629/637 (98%), Gaps = 3/637 (0%)
Strand = Plus / Plus
Query: 7 gaattccaccatctcaa-gggttgcttgtacttcagaggaagaacttctaactcatatac 65
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcca-catct-aaggggttgcttgtacttcagaggaagaacttctaactcatatac 264
Query: 66 aaggatggggccttcttctgctcaaagacaggaaaagatacttatggaggttgcaattct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 aaggatggggccttcttctgctcaaagacaggaaaagatacttatggaggttggaattct 324
Query: 126 aactatcgaatttattttcttaacaatgcaaaagtttttttcccctgtaagcactttcct 185
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactatcgaatttattttcttgacaatgcaaaagtttttttcccctgtaagcactttcct 384
Query: 186 gaaaggtctgcctaaaatatttgcttagatttcattagccataaacgtaatgaaaggtca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaggtctgcctaaaatatttgcttagatttcattagccataaacgtaatgaaaggtca 444
Query: 246 ttaaatacctgaaaagtgagctgagaaaaggtttctggtaaacacgtaagtaaacctcca 305
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 ttaaatacctgaaaagtgagctgagaaacggtttctggtaaacacgtaagtaaacctcca 504
Query: 306 ggtagcataggcgggatccacaacgctgaatggctcagggtccggagaaatagagggaag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtagcataggcgggatccacaacgctgaatggctcagggtccggagaaatagagggaag 564
Query: 366 atggcatatctgattttataaccaaaacttttttttaagatttattttatatataagtac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggcatatctgattttataaccaaaacttttttttaagatttattttatatataagtac 624
Query: 426 actgtagctgtcttcagacacaccacaagaagtatcagatcccatttcagatggttgtga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgtagctgtcttcagacacaccacaagaagtatcagatcccatttcagatggttgtga 684
Query: 486 gccaccatgtggtgactgggaatcgaacccaggacctctggaagagcagtccacgccctt 545
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 685 gccaccatgtggtgactgggaatcgaacccaggacctctggaaaagcagtccatgccctt 744
Query: 546 aaccgctgagccacctctccagccccataaccaaaacttttaatgctagcaaagcaagca 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaccgctgagccacctctccagccccataaccaaaacttttaatgctagcaaagcaagca 804
Query: 606 tcctatttagactatttatactatttagcataagctc 642
|||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcctatttagactatttatactatttagcataagctc 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space: 651592
Effective search space used: 651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_p13.g1 MSMg01no116_p13.g1 CHROMAT_FILE:
MSMg01no116_p13.g1 PHD_FILE: MSMg01no116_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:22 2005
(289 letters)
>mm_chr5_96760186_96760874
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%), Gaps = 1/289 (0%)
Strand = Plus / Minus
Query: 1 tctagacagtttttaaaagaccaagatgggttcttatctagatgcaacaggaaacagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctagacagtttttaaaagaccaagatgggttcttatctagatgcaacaggaaacagata 295
Query: 61 gtgcagtccaatcaatagcagacactgctgtgtttggtttcctaaatattgcttactagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtgcagtccaatcaatagcagacactgctgtgtttggtttcctaaatattgcttactagt 235
Query: 121 cacactttcttatgtgaatatgtgtgtaaaagaatgtgtgcgtagtgtgtcaagcaagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cacactttcttatgtgaatatgtgtgtaaaagaatgtgtgcgtagtgtgtcaagcaagcg 175
Query: 181 tgtgtgcacgtgtgggcgaatgtgtggggtgtgcgtgcgcacgcgcgtaggccagaccga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tgtgtgcacgtgtgggcgaatgtgtggggtgtgcgtgcgcacgcgcgtaggccagaccga 115
Query: 241 gattgacctcacggtgtcctgcttagtggctctccacactgaacctgga 289
||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 114 gattgacctca-ggtgtcctgcttagtggctctccacattgaacctgga 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
