Query= MSMg01no117_f11.b1 MSMg01no117_f11.b1 CHROMAT_FILE:
MSMg01no117_f11.b1 PHD_FILE: MSMg01no117_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:52 2005
(554 letters)
>mm_chr5_79206576_79207531
Length = 956
Score = 1006 bits (520), Expect = 0.0
Identities = 544/554 (98%), Gaps = 6/554 (1%)
Strand = Plus / Plus
Query: 5 gaattctggattg---tactcatggacactctgggactcaccaagcatacttagaattat 61
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattctggattgagat--tcatggacactctgggactcaccaggcatacttagaattat 262
Query: 62 aaattgtgaagtcagaaactgtggggtgcccatccacagccatgaccatcatgagaatgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaattgtgaagtcagaaactgtggggtgcccatccacagccatgaccatcatgagaatgg 322
Query: 122 tgctcaataatatctaaacaccaagacagacattgaagtgggagaggactctacaaagga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgctcaataatatctaaacaccaagacagacattgaagtgggagaggactctacaaagga 382
Query: 182 atcaaaacgctaacaattattttt-cccccatgcagagtagtaagacaactggtcttatc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 383 atcaaaacgctaacaattatttttccccccatgcagagtagtaagacaactggtcttatc 442
Query: 241 atttgacaaatgaagaaaaacatagtgttataaacgataatctataaggatgtatcagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atttgacaaatgaagaaaaacatagtgttataaacgataatctataaggatgtatcagat 502
Query: 301 ttaattatatatttaaatgtataacttcataaatgcatctgaatataggtgatccaccct 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 503 ttaattatatatttaaatgtataacttgataaatgcatctgaatataggtgatccaccct 562
Query: 361 ctaattttgactcatactcaagatgtcgatttttgcttttgaggctttctacctcctata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctaattttgactcatactcaagatgtcgatttttgcttttgaggctttctacctcctata 622
Query: 421 ttgagccttttggaagcctgtcaactcaatattcttaagtgtttaataaacatcgagaaa 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgagccttttggaagcctgtcatctcaatattcttaagtgtttaataaacatcgagaaa 682
Query: 481 aacccattagtacatcctccaaccaaaagattaaggtgcactttgccttagtaccagcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aacccattagtacatcctccaaccaaaagattaaggtgcactttgccttagtaccagcaa 742
Query: 541 gctcaacactgtct 554
||| ||||||||||
Sbjct: 743 gctaaacactgtct 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space: 514624
Effective search space used: 514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_f11.g1 MSMg01no117_f11.g1 CHROMAT_FILE:
MSMg01no117_f11.g1 PHD_FILE: MSMg01no117_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:52 2005
(621 letters)
>mm_chr5_79277012_79278032
Length = 1021
Score = 1139 bits (589), Expect = 0.0
Identities = 613/621 (98%)
Strand = Plus / Minus
Query: 1 actagaaattactcactaaaaggcagctacatttggaaagtaatctattattatttccca 60
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 821 actagaaattacccactaaaaggcagctgcatttggaaagtaatctattattatttccca 762
Query: 61 accatcgttccctaccattgcttcttctaaatcttgcattctggtagaacctctgaaaac 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 761 accatcgttccctaccattgcttcttctaaatcttgaattctggtagaacctctgaaaac 702
Query: 121 aagacattcctttagaagatgtgtatgcaaatatctgcaatgatgcctgtgttggaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aagacattcctttagaagatgtgtatgcaaatatctgcaatgatgcctgtgttggaggtt 642
Query: 181 ctattgggacttcaggatagcataggtatattcaatgatattttctaaaataattctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctattgggacttcaggatagcataggtatattcaatgatattttctaaaataattctcca 582
Query: 241 atacaaaatttccctataagattttactatgaacagcaccatcttgtcttatatatccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atacaaaatttccctataagattttactatgaacagcaccatcttgtcttatatatccta 522
Query: 301 cttgctactttctttttgaagggtacaagacaccattataaaaagatgaaggaaaatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cttgctactttctttttgaagggtacaagacaccattataaaaagatgaaggaaaatttt 462
Query: 361 aaggtatatctcacagtgtattatacacattcacatttatatctcctaaagtgtaaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaggtatatctcacagtgtattatacacattcacatttatatctcctaaagtgtaaaaat 402
Query: 421 tgaatttccctacatctcacatttcatgtgaaagaaataggaaaatagtgtgcttctcct 480
||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct: 401 tgaatttccctacatctcacatttcatgtgaaagaaataagaaaatagtgtgattttcct 342
Query: 481 attacacaatttattcaatatactttttccctgttctttcttttctataggtcctaaatt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 attacacaatttattcaatatacttttcccctgttctttcttttctataggtcctaaatt 282
Query: 541 tcaaccctgatcacacagaatgttgggacttgtgtggatttccccaatgtccttaatttc 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 281 tcaaccctgatcacacagaatgttgggacttgtgtggatttccccaatgtacttaatttc 222
Query: 601 caaatatcaaatctgaacttg 621
|||||||||||||||||||||
Sbjct: 221 caaatatcaaatctgaacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
