Query= MSMg01no117_f19.b1 MSMg01no117_f19.b1 CHROMAT_FILE:
MSMg01no117_f19.b1 PHD_FILE: MSMg01no117_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:53 2005
(297 letters)
>mm_chr5_53037429_53038125
Length = 697
Score = 514 bits (266), Expect = e-150
Identities = 293/308 (95%), Gaps = 11/308 (3%)
Strand = Plus / Minus
Query: 1 atatactgacctgtgcctgagaattcactgtggtcaaagaacaagaagccaacaacccct 60
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 405 atatactgacctgtgcttgaggattcactgtggtcaaagaacaagaagccaacaaccctt 346
Query: 61 tgaggctgttgatgccctatctttggactttgtgatcaaagtataggaagactgaagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgaggctgttgatgccctatctttggactttgtgatcaaagtataggaagactgaagtct 286
Query: 121 tgtcttggtgcctctctggatagattgttgctgctgctgctgctgcagtgcttctaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtcttggtgcctctctggatagattgttgctgctgctgctgctgcagtgcttctaagat 226
Query: 181 tgaaccgaggcaaggtggtaagca-----cc------ctaggcccttgatacaactctct 229
|||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 225 tgaaccgaggcaaggtggtaagcacatggccacagatctaggcccttgatacaactctct 166
Query: 230 ctcagacagggtgtcattaaagtatccagactggacttgaacttactgtatggcccactt 289
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ctcagacagggtgtcactaaagtatccagactggacttgaacttactgtatggcccactt 106
Query: 290 aggcctag 297
||||||||
Sbjct: 105 aggcctag 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_f19.g1 MSMg01no117_f19.g1 CHROMAT_FILE:
MSMg01no117_f19.g1 PHD_FILE: MSMg01no117_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:53 2005
(530 letters)
>mm_chr5_52890285_52891216
Length = 932
Score = 955 bits (494), Expect = 0.0
Identities = 522/532 (98%), Gaps = 2/532 (0%)
Strand = Plus / Plus
Query: 1 gatgatgactgtgtgaaaaggggcgttccaacacggatgtcattctcttttatatgggat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gatgatgactgtgtgaaaaggggcgttccaacacggatgtcattctcttttatatgagat 260
Query: 61 ccgtgatgtacatatgttgtttggggatggccacaaagcatcctgga--tttttttccct 118
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 261 ccgtgatggacatatgttgtttggggatggccacaaagcatcctggattttttttttcct 320
Query: 119 aagaaatggtcatgaagatgattattctctacactgctgtaaagttgtatctttctttct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaaatggtcatgaagatgattattctctacactgctgtaaagttgtatctttctttct 380
Query: 179 gtggtctgatacgatcagcagcaggcacatgacccaaccttggccacactatactctctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtctgatacgatcagcagcaggcacatgacccaaccttggccacactatactctctg 440
Query: 239 ttctggaacttgggattctaagccacgccaatgcacacatctggcattcgctattcccac 298
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ttctggaacttgggattcaaagccacgccaatgcacacatctggcatttgctattcccac 500
Query: 299 tgctgtgcccagacactatgatgatatgggtgttaaggttggggtgccctgccttaatcg 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctttgcccagacactatgatgatatgggtgttaaggttggggtgccctgccttaatcg 560
Query: 359 tccatcttcaggtcagttctccagcctcctgaagattctgcaagtctccaaacaatcctt 418
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 561 tccatcttcaggtcagttctccagcctcctgaagattctgcaagtctcgaaaaaatcctt 620
Query: 419 ccagtggatctttttgtgacattacagcctgcttttgttgcttgctatgcttgctataaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagtggatctttttgtgacattacagcctgcttttgttgcttgctatgcttgctataaa 680
Query: 479 taatcgaacatagattatctctcgtcttcacatgtccctgatgcggtctaga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatcgaacatagattatctctcgtcttcacatgtccctgatgcggtctaga 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 932
Length adjustment: 10
Effective length of query: 520
Effective length of database: 922
Effective search space: 479440
Effective search space used: 479440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
