BAC Information

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BAC

Clone NameMSMg01-117F22
Chromosome5 (Build37)
Map Location 87,612,162 - 87,612,715
singlet/doubletsinglet
Overlap genenone
Upstream geneGnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848
Downstream geneUgt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117F22.T7 (MSMg01no117_f22.b1)MSMg01-117F22.TJ (MSMg01no117_f22.g1)
ACCAG328519AG328520
length701697
length of high quality
(start - end)		613 (41 - 653)573 (75 - 647)
definitionCHROMAT_FILE: MSMg01no117_f22.b1 PHD_FILE: MSMg01no117_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:54 2005CHROMAT_FILE: MSMg01no117_f22.g1 PHD_FILE: MSMg01no117_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATT
CTCAACTAGGGACTGCTGAATGTTTGAGAATCACCTGAAAAAAATGTTCA
ACATCCTTAATAATTATAAAAATGCAAATCAAAACAACCCTGAGATTGCA
CCTCACACCAGTAAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCAAGGATGTTGAGAAAGAAGAACACTCCTCCATTGCTCGTGGGAT
TGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGTAGTTCCTCAGAAA
ATTGCACATGGTACTACCAGAAAATCCACCAATACCTCTTCTAGGCATAT
ATCCAGAAGATGTTCCCACTTGTAATAAGGACACATGCTCCACTATGCTC
ATAGTAGTCTTATTTATAATAGCCAGAAGCTGGAAATAACCCAGATGTCC
CTCAACAAAGAAATGGATACAGAAAATGTGGTGGTACTTTTACACAATGG
AGTACTACTCAGCAATTCAAAACAATGAATTTATGAAATTCTTAGGAAAA
TGGATGGATTTGGGGGATATCATCCTGTATGATGCAATACAATCAGAAAA
GAACACACATGATATGCACTCACTGCTAATTGGATATTAGCCCAGAAACT
TAGAATACCCAAGATACAATTTGTAAAACACATGAAACTCAAGAAGAAAG
A

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTTTCTTTTCATCAAAGATCTTT
TATGCTGAATAAAAATAAAATAACATGGCAAAACGTACTTCCAAATTTCC
ATTTGTTAAGAAGCTAATTGTTGTTTGTCCTCTTGCTTTCTTACCAAACA
CGAGCAAGAAGCACTGAGTTTCTAAAAATGAAGAACTTAAAGAACAGCAG
TAATTCTGAGAACAATGAGCTCAGTTAGACATTAGACATTGAGCCACATG
GGTAACCTTTCACTTGCTGTCCAGGTAGACAATGAGAAATGACAGCAACA
AGGCTTGAATTTTGCTTACAAAGTATTAGATAAATGTTTATTAGAGTCAG
TGTTTGTGGATCATTTTACTCTTGAAACCTCATCATTCTATACATACGTG
TCATGTGAGATCTCAAGGGATAAGTTTTGTGTCTTAGTTGTCAACTAAAA
GTAGAAGAAAATCATGAACTGAAGAAACATGTTGCTACATATATATATAT
ATATATATATATGTATATATATGTGTGTATATATATGTACATATATACAT
GTGTATAATATATATGTAATATTCAATATATTATATTATTACTTAATATA
ATATATGTATATATTATACAAATATTGTAGATAGATATAGATTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_f22.g1 MSMg01no117_f22.g1 CHROMAT_FILE:
MSMg01no117_f22.g1 PHD_FILE: MSMg01no117_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:54 2005
         (573 letters)



>mm_chr5_87612054_87613027
          Length = 974

 Score = 1009 bits (522), Expect = 0.0
 Identities = 551/572 (96%), Gaps = 19/572 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttttcttttcatc-aaagatcttttatgctgaataaaaataaaataacatggcaaaa 59
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 attttttcttttcatcaaaagatcttttatgctgaataaaaataaaataacatggcaaaa 603

                                                                       
Query: 60  cgtacttccaaatttccatttgttaagaagctaattgttgtttgtcctcttgctttctta 119
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 602 tgtacttccaaatttccatttgttaagaaactaattgttgtttgtcctcttgctttctta 543

                                                                       
Query: 120 ccaaacacgagcaagaagcactgagtttctaaaaatgaagaacttaaagaacagcagtaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ccaaacacgagcaagaagcactgagtttctaaaaatgaagaacttaaagaacagcagtaa 483

                                                                       
Query: 180 ttctgagaacaatgagctcagttagacattagacattgagccacatgggtaacctttcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttctgagaacaatgagctcagttagacattagacattgagccacatgggtaacctttcac 423

                                                                       
Query: 240 ttgctgtccaggtagacaatgagaaatgacagcaacaaggcttgaattttgcttacaaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttgctgtccaggtagacaatgagaaatgacagcaacaaggcttgaattttgcttacaaag 363

                                                                       
Query: 300 tattagataaatgtttattagagtcagtgtttgtggatcattttactcttgaaacctcat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tattagataaatgtttattagagtcagtgtttgtggatcattttactcttgaaacctcat 303

                                                                       
Query: 360 cattctatacatacgtgtcatgtgagatctcaagggataagttttgtgtcttagttgtca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cattctatacatacgtgtcatgtgagatctcaagggataagttttgtgtcttagttgtca 243

                                                                       
Query: 420 actaaaagtagaagaaaatcatgaactgaagaaacatgttgctacatatatatatatata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 actaaaagtagaagaaaatcatgaactgaagaaacatgttgctacatatatatatatata 183

                                                                       
Query: 480 tatatatatgtatatatatgtgtgtatatatatgtacatatatacatgtgtataatatat 539
           |||||                  |||||||||||||||||||||||||||||||||||||
Sbjct: 182 tatat------------------gtatatatatgtacatatatacatgtgtataatatat 141

                                           
Query: 540 atgtaatattcaatatattatattattactta 571
           ||||||||||||||||||||||||||||||||
Sbjct: 140 atgtaatattcaatatattatattattactta 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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