Query= MSMg01no117_g18.b1 MSMg01no117_g18.b1 CHROMAT_FILE:
MSMg01no117_g18.b1 PHD_FILE: MSMg01no117_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:58 2005
(585 letters)
>mm_chr5_72301217_72302201
Length = 985
Score = 1060 bits (548), Expect = 0.0
Identities = 575/586 (98%), Gaps = 8/586 (1%)
Strand = Plus / Minus
Query: 4 gaattcacttgtattctcat---catgctgtttaccttaa-aaataagctggtgattttt 59
||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 785 gaattcacttgta--cccatatccatgctgtttaccttaacaaataagctggtgattttt 728
Query: 60 ctttgttttgttttgatttttgcagaggattagctctcagaggagtgtttaggagttcaa 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 -tttgttttgttttgatttttgcagaggattagctctcagaggagtgtttaggagttcaa 669
Query: 120 catggtgctcatttgtatctatatccattctattttttttttaaacaaagtgaagcctca 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 668 catggtgctcatttgtatctatatccattcta-tttttttttaaacaaagtgaagcctca 610
Query: 180 ttttggggagtgtcctttataacatattagttggtaactgtatagcaattaaagacttaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttttggggagtgtcctttataacatattagttggtaactgtatagcaattaaagacttaa 550
Query: 240 ttgtttaataatggagatactaaggtaaaaaatattaactattggcttaatttagatagt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttgtttaataatggagatactaaggtaaaaaatattaactattggcttaatttagatagt 490
Query: 300 caggaacatacgatgtcaaaatgcttaaaaactggttatcagttattaaggtctatgact 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caggaacataggatgtcaaaatgcttaaaaactggttatcagttattaaggtctatgact 430
Query: 360 ataggaattcttatttgcattggatcctttcaactcataaggaggaatttttacaattat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ataggaattcttatttgcattggatcctttcaactcataaggaggaatttttacaattat 370
Query: 420 gtttggaattagtcagattcgaaagcctagacatgcttcttctctggagctatggccatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtttggaattagtcagattcgaaagcctagacatgcttcttctctggagctatggccatt 310
Query: 480 tttcttaatccaagtctctggttgtttaatcaatgtcatacccctcagataggatctgca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttcttaatccaagtctctggttgtttaatcaatgtcatacccctcagataggatctgca 250
Query: 540 ttgagttcataaagaaatatggttcaggttttcaatgactttagaa 585
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 249 ttgagttcataaagaaatatgtttcaggttttcaatgactttagaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_g18.g1 MSMg01no117_g18.g1 CHROMAT_FILE:
MSMg01no117_g18.g1 PHD_FILE: MSMg01no117_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:58 2005
(528 letters)
>mm_chr5_72171185_72172112
Length = 928
Score = 969 bits (501), Expect = 0.0
Identities = 521/528 (98%)
Strand = Plus / Plus
Query: 1 attagctccagatgtattgggcatagactttgctccacttcagagatcattcttaaacat 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagctccagacgtattgggcatagactttgctccacttcagagatcattcttaaacat 260
Query: 61 ccaggagacaaagtgcttatttcttccagtttcaggagttgttacgccgtatgggcaggt 120
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 261 ccaggagacaaagtgcttatttcttccagtctcaggagttgttacgcagtatgggcaggt 320
Query: 121 ctttatcatgccagtgaatcagtgtgtccattcctgtgcccatgtgcatgttgcaaggat 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ctttatcatgccagtgaatcagtgtgcccattcctgtgcccatgtgcatgttgcaaggat 380
Query: 181 atctgcttgattgtgaatctgggcatgcaacaataggcattttatccaagtacgtgcttt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctgtttgattgtgaatctgggcatgcaacaataggcattttatccaagtacgtgcttt 440
Query: 241 tccatttatcttcatcatggaggcacagaattgaatttctgcccagattcctggcatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tccatttatcttcatcatggaggcacagaattgaatttctgcccagattcccggcatgtg 500
Query: 301 acttctctttttctattagtttgcgacatcagggacagattttctgttttcaaacagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttctctttttctattagtttgcgacatcagggacagattttctgttttcaaacagtca 560
Query: 361 tgatattttaataagactcctgagacacatttttttaattcccctccatgctgtcttcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatattttaataagactcctgagacacatttttttaattcccctccatgctgtcttcaa 620
Query: 421 gtttcatttttgaagccatgacctacttacatggttcaaaaggcctcatgcaagatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttcatttttgaagccatgacctacttacatggttcaaaaggcctcatgcaagatgaaa 680
Query: 481 atacagatcaccttgtcaacgataaggnggcagggccacggcactaca 528
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 atacagatcaccttgtcaacgataagggggcagggccacggcactaca 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
