BAC Information

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BAC

Clone NameMSMg01-117H10
Chromosome5 (Build37)
Map Location 123,910,950 - 124,061,238
singlet/doubletdoublet
Overlap geneLOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1
Upstream geneAtp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip
Downstream geneZcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117H10.T7 (MSMg01no117_h10.b1)MSMg01-117H10.TJ (MSMg01no117_h10.g1)
ACCAG328590AG328591
length708705
length of high quality
(start - end)
325 (42 - 366)239 (72 - 310)
definitionCHROMAT_FILE: MSMg01no117_h10.b1 PHD_FILE: MSMg01no117_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:02 2005CHROMAT_FILE: MSMg01no117_h10.g1 PHD_FILE: MSMg01no117_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,910,950 - 123,911,271)(124,061,000 - 124,061,238)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGAATT
CACTACGTACCAGGCCAGGATGGTCTTAAATGTATAGGGATCCCCCACCT
CTGCCTCCCAAGTGCAGGGATTAAAGGTGTGCACCGCCACACCTGGCCCA
TGGGCACATCTTTCACGTTAGATTTTCCGTACATACAATGGCAGATACTA
ACGTAGTGGACACATAATGATCACCGTCCACTCCAGTGGTCAGCTCAGGG
CCAGTTTACTTTCCGTCCACCTTACCCTCGTTTCTCTCACTTTGAAATAA
AGCCAGACACCATGTGTATTTTATCTGTTAATAGCATTTTGGTTTTTGTA
ATTGGTGGACCATGGTTTGTCATGGGAGGCCAAGGCAAGCAAATTTCTAT
GAGTTCAGGCCCACCATAGTCTACATAGCAAACTTCATGCCCCCCAGGGC
TACATGTAAGACCCCGTCTTAAACATGCAAAGAAACAACAGAAACTCCCT
CAAATACCCACCCCCATTTCCAGAAATGAAGTAATAAGTCATTCCAAGGC
TCCTGACAGGTTACAGTAGACCAAAAATGTGGAGAATGGAGCCTTATAAT
TAATCCAATTTCTCTTTTGCTGAATCATGAGCTACACAAACTCTTATTTA
AAAAGGGTCAAGAACTTTCTAAGATAAAAGATCACTTTCCTGCCTGAATT
GGTACAGC
TCGATGAAGTGGGAGGCCTGGCGGCCGCGGTTTCTCATCTGGAGGTGAAC
TATAGAATTTCAACAGCAATCCTGATGCATGCCTATAAACCCAGTCCTTG
GGCGGTAGCAGTGGAACACTTAGGAGTTCAAAGCTGGTCTGGGCTACGTA
AGATCCTAAAAACTAGTGAAAAAGCCAAAGGATGAAGAGGAAGCCCCCAT
ATGTGGTAGTCATAGATAACTACTTAGTGGTGGCACTGTGAGAGTTTTAT
AGCCTTCCTTTTATCCTACACAGTTTCCCCTTCAACTTTCTTCCATTTCC
CCACCCCTGTATTTGGCTAATTTTGGCTTGATTCAGTATTTACATCCTTT
CGTGTCTTCTTGAGCGAGTCATTTCTGGAGCTTGAATTCGCCACAAATTT
GTGGCGTCAGGTTATTTCTGTTCTGTCTACACGTAGCATTTCCCTTTGGA
TGTCACTCTGATGCCCTGTGCCCATCTCCCCAGCTCACAGAAATTCTTCC
CAAAAAGCTATCTGAGGTGGGATGTGAAGGTCTAGATAGTTTCAGGCGCT
TTTTAAAGTCACTGGCTAGTAAGACTTTCTGAAAGCAGTTCAAAGAAACG
GTATGCCAAGCTGGAAAAGCTACGTCGAGACTGATCCCCCATAAAACGTT
GTTTTTCTGATCTTCCAAAATGGACATGTGTAAGGTAATTTGTTATAATA
AAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_h10.b1 MSMg01no117_h10.b1 CHROMAT_FILE:
MSMg01no117_h10.b1 PHD_FILE: MSMg01no117_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:02 2005
         (325 letters)



>mm_chr5_123910747_123911471
          Length = 725

 Score =  561 bits (290), Expect = e-164
 Identities = 314/322 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactacgtaccaggccaggatggtcttaaatgtatagggatcccccacctctgc 63
           |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattcactacgtagtaggccaggatggtcttaaatgtatagggatcccccacttctgc 263

                                                                       
Query: 64  ctcccaagtgcagggattaaaggtgtgcaccgccacacctggcccatgggcacatctttc 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaccaagtgcagggattaaaggtgtgcaccgccacacctggcccatgggcacatctttc 323

                                                                       
Query: 124 acgttagattttccgtacatacaatggcagatactaacgtagtggacacataatgatcac 183
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 aggttagattttccgtacatacaatggcagatactaacgtagtggacacataatgaccac 383

                                                                       
Query: 184 cgtccactccagtggtcagctcagggccagtttactttccgtccaccttaccctcgtttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgtccactccagtggtcagctcagggccagtttactttccgtccaccttaccctcgtttc 443

                                                                       
Query: 244 tctcactttgaaataaagccagacaccatgtgtattttatctgttaatagcattttggtt 303
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 444 tctcactttgaaataaagccagacaccatgtggattttatctgttaatagcagtttggtt 503

                                 
Query: 304 tttgtaattggtggaccatggt 325
           ||||||||||||||||||||||
Sbjct: 504 tttgtaattggtggaccatggt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no117_h10.g1 MSMg01no117_h10.g1 CHROMAT_FILE:
MSMg01no117_h10.g1 PHD_FILE: MSMg01no117_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:02 2005
         (239 letters)



>mm_chr5_124060714_124061352
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatgcatgcctataaacccagtccttgggcggtagcagtggaacacttaggagttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 525 ctgatgcatgcctataaacccagtccttgggcggtagcagtggaagaattaggagttcaa 466

                                                                       
Query: 61  agctggtctgggctacgtaagatcctaaaaactagtgaaaaagccaaaggatgaagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agctggtctgggctacgtaagatcctaaaaactagtgaaaaagccaaaggatgaagagga 406

                                                                       
Query: 121 agcccccatatgtggtagtcatagataactacttagtggtggcactgtgagagttttata 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agcccccatatgtggttgtcatagataactacttagtggtggcactgtgagagttttata 346

                                                                      
Query: 181 gccttccttttatcctacacagtttccccttcaactttcttccatttccccacccctgt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gccttccttttatcctacacagtttccccttcaactttcttccatttccccacccctgt 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)