CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATAAATTCTCTCTTTTTATAACTGAGTAGTACTCCATTGT
GTAAATGTACCACATTTTCTGTATCCTTTCCTCTGTTGAGGGGCATCTGG
GTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTG
GAGCATGTGTCCTTCTTACCAGTTGGAACATCTTCTGGATATATGCCCAG
GAGACGTATTGCAGGATCCTCCAGTAGTACTATGTCCAATTTTCTGAGGA
ACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAA
CAATGGAGGAATGTTCCTCTTTCTCCACATCCTCGCCAACATCTGCTGTC
ACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCA
GGGTTGTTTTGATTTGCATTTTCCTGATGATTAAGGGTGCTGAACATTTT
TTCAGGTGCTTCTCAGCCATTTGGTATTCCTCAGGTAAGAATTCTTTGTT
AAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCTA
CCTTCTTGAGTTCTTATATATATTGGATATTAGTCCCCTATTTGATTTAG
GATGGGTAAAGATCCTTTCCCAATCTCTTGGTGGCCTTTTTGTCTTATTG
ACGGA

NNNTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCAT
TTTTTAATGGGTGTTATTTGAATTTCTGGAGTTCAGCTTCTTGAGCTCTT
TGTATATATTGGATATTAGCCCCCTATCAGATTTAGGATTTAGCTCTACT
GAAACACATGTGGCCACAGGCCACAGGTTGGATACTAACACCAGCATCCT
TTGAATTTTGTAGTGCATTTATAAAGGAGGCTGGATACAAATTATTTTTC
CTGTTTCCTGTTGGAGAAAATCAAGATTGGAGGAGCAAATTATCCATCCT
AGGCTCACTAAATAAAGTCCAGGCAGGAGCACAACAGAAACACACATCTG
CACTTGAACAAGATCTTCCTCTACTGCTTCCTGGGATAGCTGCCTGTACT
TGGGAAGAACCAGGCAAGCCCATAGCAGTTGACAGAACTGTTAGTCCTAG
TTTTGGGTAGATTGCAGCCCAGTCCCAAGGAGGAGCTCCTAGACTGCTCT
TGTTGCCAATCCCTGGACTTGAGCCAGCCACATACTTCTTGATGTTGACC
CACCCAAGTGTCCTGAGCATAAGAGAACATAAGAGTTCACTTGGCCTTAA
ATCAATGTCCAGATCAGAGAGCCCTAAGACCTGGCTCTCCTGCTCACTAA
ATT

Query= MSMg01no117_m02.g1 MSMg01no117_m02.g1 CHROMAT_FILE:
MSMg01no117_m02.g1 PHD_FILE: MSMg01no117_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:24 2005
         (596 letters)



>mm_chr5_45475733_45476728
          Length = 996

 Score = 1036 bits (536), Expect = 0.0
 Identities = 585/610 (95%), Gaps = 15/610 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgtaccccattttttaatgggtgttatttgaatttctggagttcagct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tttgtttagctctgtacccca-tttttaatgggtgttatttgaatttctggagttcagct 884

                                                                       
Query: 61  tcttgagctctttgtatatattggatattagccccctatcagatttaggatttagctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tcttgagctctttgtatatattggatattagccccctatcagatttaggatttagctcta 824

                                                                       
Query: 121 ctgaaacacatgt--------------ggccacaggccacaggttggatactaacaccag 166
           |||||||| ||||              |||||||||||||||||||||||||||||||||
Sbjct: 823 ctgaaacatatgtggccacaggccacaggccacaggccacaggttggatactaacaccag 764

                                                                       
Query: 167 catcctttgaattttgtagtgcatttataaaggaggctggatacaaattatttttcctgt 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 catcctttgaattttgtagtgcatttataaaggaggctggatacaaattatttttcctgt 704

                                                                       
Query: 227 ttcctgttggagaaaatcaagattggaggagcaaattatccatcctaggctcactaaata 286
           |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||
Sbjct: 703 ttcctgttggagaaaatcaagattggtggaggaaattatccatcctaggcttactaaata 644

                                                                       
Query: 287 aagtccaggcaggagcacaacagaaacacacatctgcacttgaacaagatcttcctctac 346
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 643 aagtccagtcaggagcacaacagaaacacacatctgcacttggacaagatcttcctctac 584

                                                                       
Query: 347 tgcttcctgggatagctgcctgtacttgggaagaaccaggcaagcccatagcagttgaca 406
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 583 tgcttcctggaatagctgcctgtacttgggtagaaccaggcaagcccatagcagttgaca 524

                                                                       
Query: 407 gaactgttagtcctagttttgggtagattgcagcccagtcccaaggaggagctcctagac 466
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaactgttagtcctagtgttgggtagattgcagcccagtcccaaggaggagctcctagac 464

                                                                       
Query: 467 tgctcttgttgccaatccctggacttgagccagccacatacttcttgatgttgacccacc 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgctcttgttgccaatccctggacttgagccagccacatacttcttgatgttgacccacc 404

                                                                       
Query: 527 caagtgtcctgagcataagagaacataagagttcacttggccttaaatcaatgtccagat 586
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 403 caagtgtcctgagcataagagagcataagagttcacttggccttaaatcaatgtccagat 344

                     
Query: 587 cagagagccc 596
           ||||||||||
Sbjct: 343 cagagagccc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)