BAC Information

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BAC

Clone NameMSMg01-118B12
Chromosome5 (Build37)
Map Location 55,052,642 - 55,052,943
singlet/doubletsinglet
Overlap genenone
Upstream geneCckar, Tbc1d19, Stim2, EG666377
Downstream geneLOC666380, EG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118B12.T7 (MSMg01no118_b12.b1)MSMg01-118B12.TJ (MSMg01no118_b12.g1)
ACCAG329058AG329059
length709713
length of high quality
(start - end)
305 (44 - 348)77 (74 - 150)
definitionCHROMAT_FILE: MSMg01no118_b12.b1 PHD_FILE: MSMg01no118_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:50 2005CHROMAT_FILE: MSMg01no118_b12.g1 PHD_FILE: MSMg01no118_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAATCCGCGGAAT
TCCCAATCATGTACCAAGTTACAAATAGAAAAATTATGTCGGCGCATATA
ATGCATAATGAAACTGGTGAATTTTGATTCATGCATTTGATAATGAAATG
GTGTAAGTAATAAATTCCAAGCTTTTTCTGTTCTATGTGAATGAAGATCT
TCTTTCAGTAAATATATATTATTATATCTTTGCTCTGCAGTTTCTCCCAG
TGTGTAAGGCTTGGCCTTCAGCTGGTAAAGGATTGAGAAGTGATTGGTTC
ATGAGAGTGCTAACCTAATTAATTAATTAAATCATCAATGACTTCACAGC
TGAATGGGCTATTACGATTTATGGCTCCAGGAAATAGATCACTAGCAAAT
TTTGAGACTCTCACTGATCCCTTTCTTCTTTTCTCTACTTTTAGTTTCAG
TGATGCGAATGCCATTTTTTACTCGCCATTCTCTTGCCACCAGCATATGT
TGACTTGCTTTGGAGACAAAGCAATCAATCTGGCTCATTATGTATTGACC
TGCCCAATACTATCCAAAGCTACTCCTTCATCTTAATTTGCTATCCCACT
TACGTTGTGACAACGACCTAAGTACGATTTTCACGTCTATTATATTACCA
CATATGTGCTCCCATATCTGCCCTCTTGTCGTACATCTTACCCATATGAA
CGATCTTCC
CATTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTAGTTCCAATTTTGTGCTAAACGAT
ATTATTTTCTCTATTACGCTTATTGGAGCGGTGGGGTTTCTGCAGGTGTC
AGTCAGGGAAATGAACTGTGACTAGTTGGGAATGAAAACTCAGTTCAGGT
TGACTTCAGCCACCTGTATCAAGACTTCTAAAGATTTTGAGGCCAGTTAG
CTCATTGTCAGCATATTTAAAACACACTATAATTTCCAAAGTAAAAAAGA
TCAATAAGGTGTCTTGCTGAAATGTGATCCTGTGTACTGAGAAGCACAAT
TCACATTGAAATTTAACTCAGAGTACATCCCCCCTTTTTCAAGTATACGG
ATTTTATAGATTAGCTACCTACACTATCTTACGGGACTACAGAAGAGTCC
ACCCTAGCTTTAGCCATACAGATAATGGAGAGGTCCTTTGGGCCGCAAGC
TATCTCCGGTCCTAATTGTGGGAGATTGTGCATCATCTAATTAGACAGAT
AACGCACGAGTCATTTACTCTATTACATACGTCCGGCCTAGGCCATTGGA
TCTTGCAGACGAACCGGACACATGCAAGGTACACTTCAGATTGTTAGATC
TTAGAAATTCCTATAATCTGTCCTCGCCTACATAAGTTTGACATGCCCTC
GTCGTCCCAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_b12.b1 MSMg01no118_b12.b1 CHROMAT_FILE:
MSMg01no118_b12.b1 PHD_FILE: MSMg01no118_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:50 2005
         (305 letters)



>mm_chr5_55052439_55053143
          Length = 705

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcccaatcatgtaccaagttacaaatagaaaaattatgtcggcgcatataatgcat 63
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 gaattcccaatcatggaccaagttacaaatagaaaaattatgtcggcgcatatactgcat 263

                                                                       
Query: 64  aatgaaactggtgaattttgattcatgcatttgataatgaaatggtgtaagtaataaatt 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 aatgaaactggtgaattttgattcatgcatttgataatgaaatggtataagtaataaatt 323

                                                                       
Query: 124 ccaagctttttctgttctatgtgaatgaagatcttctttcagtaaatatatattattata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaagctttttctgttctatgtgaatgaagatcttctttcagtaaatatatattattata 383

                                                                       
Query: 184 tctttgctctgcagtttctcccagtgtgtaaggcttggccttcagctggtaaaggattga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctttgctctgcagtttctcccagtgtgtaaggcttggccttcagctggtaaaggattga 443

                                                                       
Query: 244 gaagtgattggttcatgagagtgctaacctaattaattaattaaatcatcaatgacttca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagtgattggttcatgagagtgctaacctaattaattaattaaatcatcaatgacttca 503

             
Query: 304 ca 305
           ||
Sbjct: 504 ca 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)