BAC Information

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BAC

Clone NameMSMg01-118G01
Chromosome5 (Build37)
Map Location 18,103,126 - 18,103,300
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118G01.T7 (MSMg01no118_g01.b1)MSMg01-118G01.TJ (MSMg01no118_g01.g1)
ACCAG329267AG329268
length703700
length of high quality
(start - end)
562 (43 - 604)288 (323 - 610)
definitionCHROMAT_FILE: MSMg01no118_g01.b1 PHD_FILE: MSMg01no118_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:12 2005CHROMAT_FILE: MSMg01no118_g01.g1 PHD_FILE: MSMg01no118_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCTTAATTAAATCATTTGAAGTGAGGATCCACTTCTAATCCGCAATTTTG
AGTGGGAAGATACACATTTCATCCTGATCTTTTGAAGTGGGGAAATCTAC
TGTTAATCTGGACCACAAGGGTCTGCTAGCAGCCTATATAAAGGACTGCT
TTGATCCTGCTAGCAAATCCATTCCGTGCATTGATATTAGAGCCTCCTTC
CAAAGACTCTCCATTGTTTATTGAAGTCCACCTGAGGTATTCAGTCCTGG
AGAGACAGAAAAACTACTGGTCCTTTAACTTTTTATTGGTGGATAGTCGT
TGCTAAACTAGCTTGCGCGCAGTATGTAAGCCATTCTAACAAATCATACG
CGTGTATATATGTGCGTATACATATATGATATGTATACACATATTTATAT
ATACATGTATATAGGTGTGTCAGTATATAAATATGTATATTTTATGTATA
TATGTGTATATATACATATATATATATATACACACACACAAAGTTCTTTT
CCTCCAAGTAACCCTAAGTAATGCACATTTTGATACCAGAAATAGTTCTA
GAGCAACAGAAGTAGAAGGATGAATATTTAAACACCTGAAATATATTTTC
CAGTTTTACTAACACCTACCCTACCTTTACTTAACGCTCTCCAGCTACAT
GGC
NCCCCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCAGTGTTTCTGTTGGATGGAGGAG
AAAGGAGCCAGATTTTTCGTGCTGCGTCACACATTCAGGAGAGTTGAGGA
CTCATGTATTGGGTCGAAGACCTCTACCGAAATGGGATGACATCATTTCT
GAAGCACCAGTTAAATGACATCAATTGTACGTGTGTCCAGGGAAAGAGGT
TTTTTATTCTTTCCTATGAACACTGGGGTGATTTCAAGATGCTTGGCCCA
GGGACGAGTACTATTAGGAGGGGTGGCTATTTTGGAGAAGGTGTGGCCTA
TTGCAGGAAGTATGTTGCTGTAGGGGTGGGCTTTGAGACCTTCCTCCTAG
CGGCCCATGAGGGAGTCTTCTCATGCTTGCTTTGGAACAAGATGTAGAAC
TTTCTGCTCCTTCTACAGTACCATCTCTGCCTGAACACTGCCGTTCTTCT
TGCCTTGAAAAAATGCTGTCCTTTATAAGAGTTGTCATGCTCACAGTGTC
TTCCCACAGCAGTGGAAAACGTAACTAAGACAACTATCATCAAACAAATA
TGGAGGTACATCAAGGTCTGGAGGAATTCCAAAAGGAGCTCAGGTTTTAG
GGTCCAGGAAAAAGGGATTATACCAGCACATATGGACAATATTTTACAAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_g01.b1 MSMg01no118_g01.b1 CHROMAT_FILE:
MSMg01no118_g01.b1 PHD_FILE: MSMg01no118_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:12 2005
         (562 letters)



>mm_chr5_18102919_18103879
          Length = 961

 Score =  325 bits (168), Expect = 5e-93
 Identities = 174/176 (98%), Gaps = 1/176 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcttaattaaatcatttgaagtgaggatccacttctaatccgcaattttgagtgggaag 67
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttaattaaatcattt-aagtgaggatccacttctaatccgcaattttgagtgggaag 324

                                                                       
Query: 68  atacacatttcatcctgatcttttgaagtggggaaatctactgttaatctggaccacaag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atacacatttcatcctgatcttttgaagtggggaaatctactgttaatctggaccacaag 264

                                                                   
Query: 128 ggtctgctagcagcctatataaaggactgctttgatcctgctagcaaatccattcc 183
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 ggtctgctagcagcctatataaaggactgttttgatcctgctagcaaatccattcc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space:   524952
Effective search space used:   524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)